1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g082500.4.1

Solyc09g082500.4.1 (TCX2, ATTCX2, Solyc09g082500)


Aliases : TCX2, ATTCX2, Solyc09g082500

Description : CPP1-like transcription factor


Gene families : OG0001700 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001700_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g082500.4.1
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Als_g14241 TSO1, ATTSO1 TCX/CPP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07596 SOL1 TCX/CPP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G109700.1 SOL1, Ceric.02G109700 TCX/CPP-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.37G017200.1 TSO1, ATTSO1,... TCX/CPP-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Gb_38828 TCX2, ATTCX2 CPP1-like transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os03g43730.1 TCX2, ATTCX2,... CPP1-like transcription factor 0.05 OrthoFinder output from all 47 species
LOC_Os12g41230.2 TCX2, ATTCX2,... CPP1-like transcription factor 0.05 OrthoFinder output from all 47 species
MA_15033g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_33846g0010 TCX2, ATTCX2 CPP1-like transcription factor 0.02 OrthoFinder output from all 47 species
Msp_g31624 TCX2, ATTCX2 TCX/CPP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17407 SOL1 TCX/CPP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR005172 CRC 526 561
IPR005172 CRC 611 647
No external refs found!