Aliases : Solyc09g090960
Description : 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris (sp|q08935|roc1_nicsy : 154.0)
Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00002p00197820 | evm_27.TU.AmTr_v1... | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00002p00271280 | evm_27.TU.AmTr_v1... | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00008p00202090 | evm_27.TU.AmTr_v1... | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
| AMTR_s00061p00032260 | PDE322, CP33,... | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00061p00142700 | ATRBP31, CP31,... | RNA processing.organelle machineries.RNA... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00148p00072380 | evm_27.TU.AmTr_v1... | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00166p00060690 | ATRBP31, CP31,... | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G60000 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.04 | OrthoFinder output from all 47 species | |
| AT2G35410 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.09 | OrthoFinder output from all 47 species | |
| AT2G37220 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.04 | OrthoFinder output from all 47 species | |
| AT3G52150 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.06 | OrthoFinder output from all 47 species | |
| AT3G52380 | PDE322, CP33 | chloroplast RNA-binding protein 33 | 0.1 | OrthoFinder output from all 47 species | |
| AT4G24770 | ATRBP31, CP31,... | 31-kDa RNA binding protein | 0.12 | OrthoFinder output from all 47 species | |
| Adi_g019288 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g022371 | ATRBP31, CP31,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g022372 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g053286 | CP31B | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g12603 | ATRBP31, CP31,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g07142 | ATRBP31, CP31,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g14081 | ATRBP31, CP31,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene12453.t1 | Aspi01Gene12453 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0007.g010976 | No alias | not classified & original description: CDS=261-1286 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0017.g014465 | ATRBP31, CP31,... | not classified & original description: CDS=173-1078 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0037.g026033 | No alias | not classified & original description: CDS=1-825 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0159.g053948 | ATRBP31, CP31,... | not classified & original description: CDS=143-1057 | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.11G096500.1 | ATRBP31, CP31,... | not classified & original description: pacid=50595915... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g21785 | ATRBP31, CP31,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g00421 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g05227 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g00942 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g05473 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g05650 | ATRBP31, CP31,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g10561 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01007596001 | CP31B | RNA processing.organelle machineries.RNA... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01013146001 | No alias | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01025697001 | No alias | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01027917001 | No alias | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01032039001 | No alias | Protein biosynthesis.organelle translation... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01032361001 | CP31B | RNA processing.organelle machineries.RNA... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_00173 | CP31B | RNA editing factor (CP31) | 0.01 | OrthoFinder output from all 47 species | |
| Gb_05747 | PDE322, CP33 | component psPSRP2 of small ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
| Gb_32176 | No alias | component psPSRP2 of small ribosomal subunit proteome | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os02g57010.1 | LOC_Os02g57010 | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os04g50110.1 | LOC_Os04g50110 | no hits & (original description: none) | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os07g06450.1 | PDE322, CP33,... | RNA-binding protein CP33, chloroplastic OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os08g44290.1 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os09g10760.1 | LOC_Os09g10760 | component psPSRP2 of small ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g39180.1 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.07 | OrthoFinder output from all 47 species | |
| MA_10434075g0010 | CP31B | component psPSRP2 of small ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
| MA_474396g0010 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.03 | OrthoFinder output from all 47 species | |
| MA_482994g0010 | CP31B | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.04 | OrthoFinder output from all 47 species | |
| MA_65183g0010 | No alias | component psPSRP2 of small ribosomal subunit proteome | 0.05 | OrthoFinder output from all 47 species | |
| Mp2g13800.1 | No alias | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.07 | OrthoFinder output from all 47 species | |
| Mp8g03420.1 | No alias | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g11334 | CP31B | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g19963 | ATRBP31, CP31,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g06203 | No alias | plastidial ribonucleoprotein *(CP33a) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g33947 | No alias | plastidial ribonucleoprotein *(CP33a) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c24_17170V3.1 | Pp3c24_17170 | chloroplast RNA-binding protein 29 | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g02835 | ATRBP31, CP31,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0062.g015482 | ATRBP31, CP31,... | not classified & original description: CDS=157-1524 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0122.g021464 | CP31B | not classified & original description: CDS=19-840 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g06842 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g08465 | ATRBP31, CP31,... | not classified & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Tin_g05046 | ATRBP31, CP31,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e003947_P001 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e007101_P002 | Zm00001e007101 | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e032835_P001 | PDE322, CP33,... | RNA-binding protein CP33, chloroplastic OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e033636_P003 | Zm00001e033636 | component psPSRP2 of small ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | HCCA |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
| MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
| MF | GO:0008171 | O-methyltransferase activity | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
| BP | GO:0015994 | chlorophyll metabolic process | IEP | HCCA |
| BP | GO:0015995 | chlorophyll biosynthetic process | IEP | HCCA |
| BP | GO:0016485 | protein processing | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
| BP | GO:0042440 | pigment metabolic process | IEP | HCCA |
| BP | GO:0046148 | pigment biosynthetic process | IEP | HCCA |
| MF | GO:0046406 | magnesium protoporphyrin IX methyltransferase activity | IEP | HCCA |
| BP | GO:0051604 | protein maturation | IEP | HCCA |
| BP | GO:0071586 | CAAX-box protein processing | IEP | HCCA |
| No external refs found! |
