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  5. Solyc09g098380.3.1

Solyc09g098380.3.1 (Solyc09g098380)


Aliases : Solyc09g098380

Description : solute transporter (AAAP)


Gene families : OG0000278 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000278_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g098380.3.1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00252100 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.05 OrthoFinder output from all 47 species
AT3G54830 No alias Transmembrane amino acid transporter family protein 0.03 OrthoFinder output from all 47 species
Adi_g017266 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g104357 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14484 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02577 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08482 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31436 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68476 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62835.t1 Aspi01Gene62835 solute transporter *(AAAP) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0045.g029906 No alias solute transporter *(AAAP) & original description: CDS=1-1626 0.04 OrthoFinder output from all 47 species
Azfi_s0215.g058427 No alias solute transporter *(AAAP) & original description: CDS=1-1575 0.04 OrthoFinder output from all 47 species
Cba_g30124 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06345 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g31336 No alias solute transporter *(AAAP) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g08582 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020259001 No alias Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
GSVIVT01031484001 No alias Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
LOC_Os04g38680.1 LOC_Os04g38680 solute transporter (AAAP) 0.05 OrthoFinder output from all 47 species
LOC_Os11g19240.1 LOC_Os11g19240 solute transporter (AAAP) 0.04 OrthoFinder output from all 47 species
Msp_g14582 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g19411 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31457 No alias solute transporter *(AAAP) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09068 No alias solute transporter *(AAAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16581 No alias solute transporter *(AAAP) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g013440.4.1 Solyc03g013440 solute transporter (AAAP) 0.04 OrthoFinder output from all 47 species
Solyc03g063050.1.1 Solyc03g063050 Amino acid transporter AVT1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc03g078150.3.1 Solyc03g078150 solute transporter (AAAP) 0.03 OrthoFinder output from all 47 species
Spa_g48860 No alias solute transporter *(AAAP) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e020612_P001 Zm00001e020612 solute transporter (AAAP) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR013057 AA_transpt_TM 43 425
No external refs found!