1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g006480.2.1

Solyc10g006480.2.1 (UBQ10, Solyc10g006480)


Aliases : UBQ10, Solyc10g006480

Description : ubiquitin-fold protein (UBQ)


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g006480.2.1

Target Alias Description ECC score Gene Family Method Actions
Aop_g32072 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene08341.t1 UBQ11, Aspi01Gene08341 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene23078.t1 UBQ4, Aspi01Gene23078 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23079.t1 UBQ4, Aspi01Gene23079 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23081.t1 UBQ11, Aspi01Gene23081 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23135.t1 UBQ11, Aspi01Gene23135 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.24G048500.1 UBQ11, Ceric.24G048500 UBQ ubiquitin-fold protein & original description:... 0.01 OrthoFinder output from all 47 species
Len_g02099 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.05 OrthoFinder output from all 47 species
MA_454078g0010 UBQ11 Polyubiquitin (Fragment) OS=Hordeum vulgare... 0.02 OrthoFinder output from all 47 species
Tin_g26605 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g40776 UBQ14 UBQ ubiquiTin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 155 226
IPR000626 Ubiquitin-like_dom 3 74
IPR000626 Ubiquitin-like_dom 383 454
IPR000626 Ubiquitin-like_dom 231 302
IPR000626 Ubiquitin-like_dom 79 150
IPR000626 Ubiquitin-like_dom 307 378
No external refs found!