Solyc10g006800.4.1 (DND2, CNGC4, HLM1,...)

Aliases : DND2, CNGC4, HLM1, ATCNGC4, Solyc10g006800

Description : cyclic nucleotide-gated cation channel (CNGC)

Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g006800.4.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G17690	CNGC19, ATCNGC19	cyclic nucleotide gated channel 19	0.06	OrthoFinder output from all 47 species
AT4G01010	ATCNGC13, CNGC13	cyclic nucleotide-gated channel 13	0.02	OrthoFinder output from all 47 species
GSVIVT01025208001	CNGC15, ATCNGC15	Solute transport.channels.VIC superfamily.cyclic...	0.03	OrthoFinder output from all 47 species
GSVIVT01028711001	ATCNGC1, CNGC1	Solute transport.channels.VIC superfamily.cyclic...	0.04	OrthoFinder output from all 47 species
GSVIVT01029404001	ATCNGC20, CNGC20, CNBT1	Solute transport.channels.VIC superfamily.cyclic...	0.03	OrthoFinder output from all 47 species
LOC_Os02g15580.1	ATCNGC1, CNGC1,...	cyclic nucleotide-gated cation channel (CNGC)	0.04	OrthoFinder output from all 47 species
LOC_Os06g33570.1	ATCNGC1, CNGC1,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Mp3g14660.1	DND2, CNGC4,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Sam_g12590	No alias	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species
Solyc05g050350.2.1	ATCNGC1, CNGC1,...	cyclic nucleotide-gated cation channel (CNGC)	0.02	OrthoFinder output from all 47 species
Zm00001e032059_P001	DND2, CNGC4,...	cyclic nucleotide-gated cation channel (CNGC)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005509	calcium ion binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005821	Ion_trans_dom	78	382
IPR000595	cNMP-bd_dom	486	573

External Links

No external refs found!