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  5. Solyc10g045220.1.1

Solyc10g045220.1.1 (PETA, Solyc10g045220)


Aliases : PETA, Solyc10g045220

Description : apocytochrome f component PetA of cytochrome b6/f complex


Gene families : OG0007601 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007601_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g045220.1.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
ATCG00540 PETA photosynthetic electron transfer A 0.47 OrthoFinder output from all 47 species
Aev_g01305 PETA apocytochrome f component *(PetA) of cytochrome b6/f... 0.33 OrthoFinder output from all 47 species
Als_g00738 PETA apocytochrome f component *(PetA) of cytochrome b6/f... 0.13 OrthoFinder output from all 47 species
Aob_g01376 PETA apocytochrome f component *(PetA) of cytochrome b6/f... 0.13 OrthoFinder output from all 47 species
Cba_g23039 PETA apocytochrome f component *(PetA) of cytochrome b6/f... 0.04 OrthoFinder output from all 47 species
Ceric.02G014700.1 PETA, Ceric.02G014700 apocytochrome f component *(PetA) of cytochrome b6/f... 0.13 OrthoFinder output from all 47 species
Ceric.05G050200.1 PETA, Ceric.05G050200 not classified & original description: pacid=50577900... 0.35 OrthoFinder output from all 47 species
Ceric.05G050300.1 PETA, Ceric.05G050300 apocytochrome f component *(PetA) of cytochrome b6/f... 0.24 OrthoFinder output from all 47 species
Ceric.16G018100.1 PETA, Ceric.16G018100 apocytochrome f component *(PetA) of cytochrome b6/f... 0.13 OrthoFinder output from all 47 species
Ceric.16G060400.1 PETA, Ceric.16G060400 not classified & original description: pacid=50589755... 0.14 OrthoFinder output from all 47 species
Ceric.33G022700.1 PETA, Ceric.33G022700 apocytochrome f component *(PetA) of cytochrome b6/f... 0.13 OrthoFinder output from all 47 species
Ceric.38G007000.1 PETA, Ceric.38G007000 apocytochrome f component *(PetA) of cytochrome b6/f... 0.24 OrthoFinder output from all 47 species
Dcu_g21017 PETA apocytochrome f component *(PetA) of cytochrome b6/f... 0.1 OrthoFinder output from all 47 species
Dde_g34851 PETA not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015185001 PETA Cytochrome f OS=Vitis vinifera 0.08 OrthoFinder output from all 47 species
Gb_37933 PETA Cytochrome f OS=Cycas taitungensis (sp|a6h5j1|cyf_cycta : 137.0) 0.14 OrthoFinder output from all 47 species
Gb_41662 PETA Cytochrome f OS=Cycas taitungensis (sp|a6h5j1|cyf_cycta : 175.0) 0.14 OrthoFinder output from all 47 species
LOC_Os01g65902.1 PETA, LOC_Os01g65902 apocytochrome f component PetA of cytochrome b6/f complex 0.51 OrthoFinder output from all 47 species
LOC_Os02g24596.1 PETA, LOC_Os02g24596 apocytochrome f component PetA of cytochrome b6/f complex 0.12 OrthoFinder output from all 47 species
LOC_Os06g39738.1 PETA, LOC_Os06g39738 apocytochrome f component PetA of cytochrome b6/f complex 0.31 OrthoFinder output from all 47 species
LOC_Os08g15280.1 PETA, LOC_Os08g15280 apocytochrome f component PetA of cytochrome b6/f complex 0.09 OrthoFinder output from all 47 species
LOC_Os10g21290.1 PETA, LOC_Os10g21290 apocytochrome f component PetA of cytochrome b6/f complex 0.05 OrthoFinder output from all 47 species
Lfl_g06925 PETA apocytochrome f component *(PetA) of cytochrome b6/f... 0.22 OrthoFinder output from all 47 species
Mp1g27760.1 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Nbi_g09593 PETA apocytochrome f component *(PetA) of cytochrome b6/f... 0.16 OrthoFinder output from all 47 species
Ore_g43249 PETA apocytochrome f component *(PetA) of cytochrome b6/f... 0.17 OrthoFinder output from all 47 species
Sam_g03361 No alias apocytochrome f component *(PetA) of cytochrome b6/f... 0.14 OrthoFinder output from all 47 species
Smo236857 PETA Photosynthesis.photophosphorylation.cytochrome b6/f... 0.29 OrthoFinder output from all 47 species
Zm00001e003903_P001 PETA, Zm00001e003903 apocytochrome f component PetA of cytochrome b6/f complex 0.05 OrthoFinder output from all 47 species
Zm00001e042161_P001 PETA, Zm00001e042161 apocytochrome f component PetA of cytochrome b6/f complex 0.04 OrthoFinder output from all 47 species
Zm00001e042498_P001 PETA, Zm00001e042498 Cytochrome f OS=Zea mays (sp|p46617|cyf_maize : 342.0) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEA Interproscan
MF GO:0009055 electron transfer activity IEA Interproscan
CC GO:0009522 photosystem I IEA Interproscan
CC GO:0009579 thylakoid IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
MF GO:0020037 heme binding IEA Interproscan
CC GO:0031361 obsolete integral component of thylakoid membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR003359 PSI_Ycf4_assembly 8 101
IPR002325 Cyt_f 297 391
IPR024094 Cyt_f_lg_dom 133 274
No external refs found!