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  5. Solyc10g054330.3.1

Solyc10g054330.3.1 (Solyc10g054330)


Aliases : Solyc10g054330

Description : no hits & (original description: none)


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g054330.3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00201p00015360 evm_27.TU.AmTr_v1... Cold shock protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g010356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g017565 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14043 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009823001 No alias Cold shock protein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os03g60600.1 LOC_Os03g60600 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g13025 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g31025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g31680 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51868 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 171 187
IPR001878 Znf_CCHC 234 250
IPR001878 Znf_CCHC 152 167
IPR001878 Znf_CCHC 70 84
IPR001878 Znf_CCHC 107 122
IPR001878 Znf_CCHC 215 230
IPR001878 Znf_CCHC 89 104
IPR001878 Znf_CCHC 51 66
No external refs found!