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  5. Solyc10g055250.1.1

Solyc10g055250.1.1 (ATCSP2, GRP2, CSDP2,...)


Aliases : ATCSP2, GRP2, CSDP2, CSP2, Solyc10g055250

Description : RNA chaperone (CSP). mRNA chaperone (CSD)


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc10g055250.1.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g042846 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Adi_g099317 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Adi_g105318 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene09691.t1 GRP2B, ATGRP2B,... cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene40719.t1 GRP2B, ATGRP2B,... cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01024055001 ATCSP2, GRP2, CSDP2, CSP2 External stimuli response.temperature.Csd... 0.04 OrthoFinder output from all 47 species
Ore_g15365 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g20696 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g06750 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019874 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0173.g024476 ATCSP3, CSP3 cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e041725_P001 CSDP1, Zm00001e041725 RNA chaperone (CSP). mRNA chaperone (CSD) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 117 133
IPR001878 Znf_CCHC 149 165
IPR002059 CSP_DNA-bd 12 76
No external refs found!