Aliases : RPS28, Solyc10g078630
Description : component RPS28 of SSU proteome
Gene families : OG0006085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006085_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc10g078630.2.1 | |
| Cluster | HCCA: Cluster_141 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G10090 | No alias | Nucleic acid-binding, OB-fold-like protein | 0.1 | OrthoFinder output from all 47 species | |
| AT5G03850 | No alias | Nucleic acid-binding, OB-fold-like protein | 0.17 | OrthoFinder output from all 47 species | |
| AT5G64140 | RPS28 | ribosomal protein S28 | 0.14 | OrthoFinder output from all 47 species | |
| Azfi_s0280.g062329 | No alias | component *(eS28) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.26G048900.1 | Ceric.26G048900 | component *(eS28) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Cre12.g510450 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os10g27174.1 | LOC_Os10g27174 | component RPS28 of SSU proteome | 0.16 | OrthoFinder output from all 47 species | |
| MA_10206328g0010 | RPS28 | component RPS28 of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
| Mp3g15160.1 | No alias | component RPS28 of SSU proteome | 0.07 | OrthoFinder output from all 47 species | |
| Pp3c14_19610V3.1 | Pp3c14_19610 | Nucleic acid-binding, OB-fold-like protein | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c1_28770V3.1 | Pp3c1_28770 | Nucleic acid-binding, OB-fold-like protein | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c5_6000V3.1 | Pp3c5_6000 | Nucleic acid-binding, OB-fold-like protein | 0.05 | OrthoFinder output from all 47 species | |
| Pp3c6_27040V3.1 | Pp3c6_27040 | Nucleic acid-binding, OB-fold-like protein | 0.01 | OrthoFinder output from all 47 species | |
| Smo170205 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e000507_P001 | Zm00001e000507 | component RPS28 of SSU proteome | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | IEP | HCCA |
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006457 | protein folding | IEP | HCCA |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
| BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
| BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
| CC | GO:0016272 | prefoldin complex | IEP | HCCA |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| MF | GO:0030515 | snoRNA binding | IEP | HCCA |
| CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | HCCA |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| CC | GO:0098798 | mitochondrial protein-containing complex | IEP | HCCA |
| CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000289 | Ribosomal_S28e | 5 | 64 |
| No external refs found! |
