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  5. Solyc10g078880.2.1

Solyc10g078880.2.1 (NRPC2, Solyc10g078880)


Aliases : NRPC2, Solyc10g078880

Description : subunit 2 of Pol III RNA polymerase


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g078880.2.1
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Aob_g11023 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g014011 EMB1989, RPB2, NRPB2 not classified & original description: CDS=34-3882 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 448 511
IPR007644 RNA_pol_bsu_protrusion 47 403
IPR007641 RNA_pol_Rpb2_7 1054 1144
IPR007642 RNA_pol_Rpb2_2 190 376
IPR007120 DNA-dir_RNAP_su2_dom 677 1052
IPR007646 RNA_pol_Rpb2_4 549 608
IPR007647 RNA_pol_Rpb2_5 630 670
No external refs found!