Solyc10g079360.3.1 (Solyc10g079360)

Aliases : Solyc10g079360

Description : basal transcription factor (TFIIb)

Gene families : OG0001894 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001894_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g079360.3.1

Target	Alias	Description	ECC score	Gene Family Method
Als_g57776	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Gb_36571	No alias	Transcription initiation factor IIB OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
MA_274894g0010	TFIIB	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Ppi_g57254	No alias	basal transcription factor *(TFIIb) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g47398	TFIIB	not classified & original description: none	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
MF	GO:0017025	TBP-class protein binding	IEA	Interproscan
MF	GO:0140296	general transcription initiation factor binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013150	TFIIB_cyclin	113	175
IPR013150	TFIIB_cyclin	212	280
IPR013137	Znf_TFIIB	4	46

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