Solyc10g079380.2.1 (AT-HSFB3, HSFB3,...)

Aliases : AT-HSFB3, HSFB3, Solyc10g079380

Description : transcription factor (HSF)

Gene families : OG0000093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000093_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g079380.2.1

Target	Alias	Description	ECC score	Gene Family Method
Ceric.29G078200.1	HSFB4, SCZ,...	HSF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Dde_g12353	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g12027	ATHSFA1D, HSFA1D	HSF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01002066001	AT-HSFB2A, HSFB2A	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	OrthoFinder output from all 47 species
GSVIVT01018041001	AT-HSFA6B, HSFA6B	RNA biosynthesis.transcriptional activation.HSF (heat...	0.05	OrthoFinder output from all 47 species
GSVIVT01033257001	AT-HSFB3, HSFB3	RNA biosynthesis.transcriptional activation.HSF (heat...	0.04	OrthoFinder output from all 47 species
Gb_05885	HSFB4, SCZ, AT-HSFB4	transcription factor (HSF)	0.04	OrthoFinder output from all 47 species
LOC_Os01g53220.1	AT-HSFC1, HSFC1,...	transcription factor (HSF)	0.04	OrthoFinder output from all 47 species
MA_11527g0010	HSFB4, SCZ, AT-HSFB4	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
MA_41252g0020	HSFA1B, ATHSF3,...	transcription factor (HSF)	0.05	OrthoFinder output from all 47 species
MA_8812600g0010	HSFB4, SCZ, AT-HSFB4	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species
MA_8992661g0010	HSFB4, SCZ, AT-HSFB4	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Nbi_g11876	HSFA1B, ATHSF3,...	HSF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012750	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: CDS=1-2229	0.02	OrthoFinder output from all 47 species
Sam_g28359	No alias	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g072060.3.1	HSFA2, ATHSFA2,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Solyc03g026020.3.1	AT-HSFB2A,...	transcription factor (HSF)	0.05	OrthoFinder output from all 47 species
Solyc04g016000.3.1	AT-HSFB3, HSFB3,...	transcription factor (HSF)	0.04	OrthoFinder output from all 47 species
Solyc12g007070.2.1	AT-HSFC1, HSFC1,...	transcription factor (HSF)	0.04	OrthoFinder output from all 47 species
Tin_g07369	HSFA1B, ATHSF3,...	HSF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e034345_P001	HSF4, HSFB1,...	transcription factor (HSF)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004568	chitinase activity	IEP	HCCA
BP	GO:0006022	aminoglycan metabolic process	IEP	HCCA
BP	GO:0006026	aminoglycan catabolic process	IEP	HCCA
BP	GO:0006030	chitin metabolic process	IEP	HCCA
BP	GO:0006032	chitin catabolic process	IEP	HCCA
BP	GO:0006040	amino sugar metabolic process	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
MF	GO:0008061	chitin binding	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0046348	amino sugar catabolic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	HCCA
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	24	113

External Links

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Solyc10g079380.2.1 (AT-HSFB3, HSFB3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation