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  5. Solyc10g081250.3.1

Solyc10g081250.3.1 (EMB2780, Solyc10g081250)


Aliases : EMB2780, Solyc10g081250

Description : component POLD1 of DNA polymerase delta complex


Gene families : OG0002006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g081250.3.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AT5G63960 EMB2780 DNA binding;nucleotide binding;nucleic acid... 0.09 OrthoFinder output from all 47 species
Adi_g057535 EMB2780 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01951 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Aop_g09717 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Ceric.29G084300.1 EMB2780, Ceric.29G084300 EC_2.7 transferase transferring phosphorus-containing... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001545.7 EMB2780 Cell cycle.interphase.DNA replication.elongation.DNA... 0.04 OrthoFinder output from all 47 species
Cre01.g015250 EMB2780 Cell cycle.interphase.DNA replication.elongation.DNA... 0.09 OrthoFinder output from all 47 species
Dcu_g13997 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Dde_g51710 EMB2780 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026455001 EMB2780 Cell cycle.interphase.DNA replication.elongation.DNA... 0.09 OrthoFinder output from all 47 species
Gb_15178 EMB2780 DNA polymerase delta catalytic subunit OS=Glycine max... 0.06 OrthoFinder output from all 47 species
Gb_15179 EMB2780 DNA polymerase delta catalytic subunit OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Gb_15180 EMB2780 component POLD1 of DNA polymerase delta complex 0.06 OrthoFinder output from all 47 species
LOC_Os11g08330.1 EMB2780, LOC_Os11g08330 component POLD1 of DNA polymerase delta complex 0.06 OrthoFinder output from all 47 species
MA_36703g0010 EMB2780 component POLD1 of DNA polymerase delta complex 0.11 OrthoFinder output from all 47 species
MA_36737g0010 EMB2780 DNA polymerase delta catalytic subunit OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
MA_780516g0010 EMB2780 DNA polymerase delta catalytic subunit OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Mp4g05690.1 EMB2780 component POLD1 of DNA polymerase delta complex 0.07 OrthoFinder output from all 47 species
Nbi_g06298 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Pp3c14_3970V3.1 Pp3c14_3970 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c2_18826V3.1 Pp3c2_18826 DNA binding;nucleotide binding;nucleic acid... 0.01 OrthoFinder output from all 47 species
Pp3c9_12701V3.1 EMB2780, Pp3c9_12701 DNA binding;nucleotide binding;nucleic acid... 0.01 OrthoFinder output from all 47 species
Sam_g25588 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Spa_g21973 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Zm00001e024553_P001 EMB2780, Zm00001e024553 component POLD1 of DNA polymerase delta complex 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006134 DNA-dir_DNA_pol_B_multi_dom 526 959
IPR006133 DNA-dir_DNA_pol_B_exonuc 119 462
IPR025687 Znf-C4pol 996 1067
No external refs found!