Aliases : Solyc10g086150
Description : 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris (sp|q08937|roc2_nicsy : 322.0)
Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00008p00202090 | evm_27.TU.AmTr_v1... | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00061p00032260 | PDE322, CP33,... | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00061p00142700 | ATRBP31, CP31,... | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00148p00072380 | evm_27.TU.AmTr_v1... | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00166p00060690 | ATRBP31, CP31,... | RNA processing.organelle machineries.RNA... | 0.02 | OrthoFinder output from all 47 species | |
| AT2G35410 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.05 | OrthoFinder output from all 47 species | |
| AT2G37220 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.05 | OrthoFinder output from all 47 species | |
| AT3G52150 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.14 | OrthoFinder output from all 47 species | |
| AT3G52380 | PDE322, CP33 | chloroplast RNA-binding protein 33 | 0.12 | OrthoFinder output from all 47 species | |
| AT3G53460 | CP29 | chloroplast RNA-binding protein 29 | 0.04 | OrthoFinder output from all 47 species | |
| AT4G24770 | ATRBP31, CP31,... | 31-kDa RNA binding protein | 0.13 | OrthoFinder output from all 47 species | |
| Adi_g019288 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g019289 | ATRBP31, CP31,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g022371 | ATRBP31, CP31,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g053286 | CP31B | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g10264 | ATRBP31, CP31,... | plastidial ribonucleoprotein *(CP33a) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g12603 | ATRBP31, CP31,... | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Aob_g07067 | ATRBP31, CP31,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g07142 | ATRBP31, CP31,... | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Aspi01Gene25641.t1 | ATRBP31, CP31,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0007.g010976 | No alias | not classified & original description: CDS=261-1286 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0017.g014465 | ATRBP31, CP31,... | not classified & original description: CDS=173-1078 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0037.g026033 | No alias | not classified & original description: CDS=1-825 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0159.g053948 | ATRBP31, CP31,... | not classified & original description: CDS=143-1057 | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g09345 | ATRBP31, CP31,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g67827 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.11G096500.1 | ATRBP31, CP31,... | not classified & original description: pacid=50595915... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.38G067800.1 | ATRBP31, CP31,... | not classified & original description: pacid=50580282... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g01274 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g05227 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01007596001 | CP31B | RNA processing.organelle machineries.RNA... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01013146001 | No alias | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01022600001 | PDE322, CP33 | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01025697001 | No alias | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris | 0.1 | OrthoFinder output from all 47 species | |
| GSVIVT01027917001 | No alias | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01032039001 | No alias | Protein biosynthesis.organelle translation... | 0.09 | OrthoFinder output from all 47 species | |
| GSVIVT01032361001 | CP31B | RNA processing.organelle machineries.RNA... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_28108 | CP31B | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_29798 | No alias | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... | 0.09 | OrthoFinder output from all 47 species | |
| LOC_Os02g57010.1 | LOC_Os02g57010 | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g25960.1 | LOC_Os03g25960 | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... | 0.19 | OrthoFinder output from all 47 species | |
| LOC_Os04g50110.1 | LOC_Os04g50110 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g06450.1 | PDE322, CP33,... | RNA-binding protein CP33, chloroplastic OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os08g44290.1 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g10760.1 | LOC_Os09g10760 | component psPSRP2 of small ribosomal subunit proteome | 0.16 | OrthoFinder output from all 47 species | |
| LOC_Os09g39180.1 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.04 | OrthoFinder output from all 47 species | |
| Len_g10051 | ATRBP31, CP31,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_320479g0010 | No alias | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... | 0.08 | OrthoFinder output from all 47 species | |
| MA_482994g0010 | CP31B | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.02 | OrthoFinder output from all 47 species | |
| MA_65183g0010 | No alias | component psPSRP2 of small ribosomal subunit proteome | 0.06 | OrthoFinder output from all 47 species | |
| Mp2g13800.1 | No alias | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.12 | OrthoFinder output from all 47 species | |
| Msp_g06420 | ATRBP31, CP31,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g02906 | ATRBP31, CP31,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g11334 | CP31B | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g19963 | ATRBP31, CP31,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g27196 | ATRBP31, CP31,... | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g41869 | ATRBP31, CP31,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g07061 | ATRBP31, CP31,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c12_9890V3.1 | Pp3c12_9890 | chloroplast RNA-binding protein 29 | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g02835 | ATRBP31, CP31,... | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0122.g021464 | CP31B | not classified & original description: CDS=19-840 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0137.g022450 | ATRBP31, CP31,... | not classified & original description: CDS=1-768 | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g06842 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g10911 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g17785 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g23920 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g07686 | ATRBP31, CP31,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g07687 | ATRBP31, CP31,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g08465 | ATRBP31, CP31,... | not classified & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Tin_g05046 | ATRBP31, CP31,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g09087 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e001824_P002 | Zm00001e001824 | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e003947_P001 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.14 | OrthoFinder output from all 47 species | |
| Zm00001e007101_P002 | Zm00001e007101 | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e010844_P001 | Zm00001e010844 | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e022086_P002 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.13 | OrthoFinder output from all 47 species | |
| Zm00001e032835_P001 | PDE322, CP33,... | RNA-binding protein CP33, chloroplastic OS=Arabidopsis... | 0.13 | OrthoFinder output from all 47 species | |
| Zm00001e033465_P001 | ATRBP31, CP31,... | RNA editing factor (CP31) | 0.12 | OrthoFinder output from all 47 species | |
| Zm00001e033636_P003 | Zm00001e033636 | component psPSRP2 of small ribosomal subunit proteome | 0.12 | OrthoFinder output from all 47 species | |
| Zm00001e035630_P001 | Zm00001e035630 | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006457 | protein folding | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0008104 | protein localization | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0015031 | protein transport | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| BP | GO:0033036 | macromolecule localization | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
| BP | GO:0071702 | organic substance transport | IEP | HCCA |
| BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
| MF | GO:0071949 | FAD binding | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| No external refs found! |
