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  5. Solyc11g005650.1.1

Solyc11g005650.1.1 (Solyc11g005650)


Aliases : Solyc11g005650

Description : Ubiquitin-60S ribosomal protein L40 OS=Brassica rapa subsp. pekinensis (sp|p51423|rl40_brarp : 117.0)


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005650.1.1

Target Alias Description ECC score Gene Family Method Actions
AT5G03240 UBQ3 polyubiquitin 3 0.02 OrthoFinder output from all 47 species
Als_g58521 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.27G039400.1 UBQ3, Ceric.27G039400 UBQ ubiquitin-fold protein & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g04523 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Gb_28249 UBQ4 ubiquitin-fold protein (UBQ) 0.02 OrthoFinder output from all 47 species
LOC_Os02g06640.1 UBQ10, LOC_Os02g06640 ubiquitin-fold protein (UBQ) 0.04 OrthoFinder output from all 47 species
Len_g49043 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g22941 UBQ11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_20231g0010 UBQ14 ubiquitin-fold protein (UBQ) 0.02 OrthoFinder output from all 47 species
MA_371071g0010 UBQ14 ubiquitin-fold protein (UBQ) 0.05 OrthoFinder output from all 47 species
MA_59925g0010 No alias Ubiquitin-40S ribosomal protein S27a OS=Solanum... 0.04 OrthoFinder output from all 47 species
Mp6g16040.1 No alias Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare... 0.01 OrthoFinder output from all 47 species
Msp_g18242 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g42666 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g02652 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Smo163447 UBQ4 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004096 catalase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 39 100
No external refs found!