Solyc12g005400.3.1 (DND2, CNGC4, HLM1,...)

Aliases : DND2, CNGC4, HLM1, ATCNGC4, Solyc12g005400

Description : cyclic nucleotide-gated cation channel (CNGC)

Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g005400.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00270020	evm_27.TU.AmTr_v1...	External stimuli response.temperature.temperature...	0.02	OrthoFinder output from all 47 species
LOC_Os02g15580.1	ATCNGC1, CNGC1,...	cyclic nucleotide-gated cation channel (CNGC)	0.05	OrthoFinder output from all 47 species
LOC_Os05g42250.1	DND2, CNGC4,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
LOC_Os06g33570.1	ATCNGC1, CNGC1,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Mp3g14660.1	DND2, CNGC4,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Sam_g12590	No alias	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species
Smo84488	DND1, ATCNGC2, CNGC2	Solute transport.channels.VIC superfamily.cyclic...	0.03	OrthoFinder output from all 47 species
Tin_g08737	CNGC15, ATCNGC15	cyclic nucleotide-gated cation channel *(CNGC) &...	0.04	OrthoFinder output from all 47 species
Zm00001e032059_P001	DND2, CNGC4,...	cyclic nucleotide-gated cation channel (CNGC)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005516	calmodulin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000595	cNMP-bd_dom	510	597
IPR005821	Ion_trans_dom	75	406

External Links

No external refs found!