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  5. Solyc12g006640.2.1

Solyc12g006640.2.1 (Solyc12g006640)


Aliases : Solyc12g006640

Description : no hits & (original description: none)


Gene families : OG0001159 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g006640.2.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00182p00048530 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
Aev_g33890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32680 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04383.t1 Aspi01Gene04383 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g10298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30399 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g37143 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g42906 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01015508001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01023260001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_05435 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_11241 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_18731 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g07850.1 LOC_Os01g07850 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os04g45590.1 LOC_Os04g45590 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g10623 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426034g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10428538g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10429874g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_15220g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_34359g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_432438g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_814986g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_9005842g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_911350g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp3g03980.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g11424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005398 No alias not classified & original description: CDS=1-540 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0171.g024374 No alias not classified & original description: CDS=151-678 0.04 OrthoFinder output from all 47 species
Sam_g11459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g103590.4.1 Solyc01g103590 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g09841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53908 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0010274 hydrotropism IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0033897 ribonuclease T2 activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR004360 Glyas_Fos-R_dOase_dom 10 128
No external refs found!