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  5. Solyc12g008830.3.1

Solyc12g008830.3.1 (GNC, GATA21, Solyc12g008830)


Aliases : GNC, GATA21, Solyc12g008830

Description : transcription factor (GATA)


Gene families : OG0000100 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g008830.3.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00064p00107710 GATA22, CGA1,... RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
Aob_g01872 GATA22, CGA1, GNL transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33196.t1 GATA12, Aspi01Gene33196 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene57616.t1 GATA5, Aspi01Gene57616 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G072900.1 GATA17, Ceric.02G072900 transcription factor *(A/B-GATA) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g20096 GNC, GATA21 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06867 GATA9 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035614001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Lfl_g27263 GATA17 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436047g0010 GATA17 transcription factor (GATA) 0.04 OrthoFinder output from all 47 species
Msp_g44006 GNC, GATA21 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01153 GATA22, CGA1, GNL transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02879 GATA15 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06391 GATA12 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35809 GATA9 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15675 GATA15 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005779 obsolete integral component of peroxisomal membrane IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR000679 Znf_GATA 119 153
No external refs found!