1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g056370.1.1

Solyc12g056370.1.1 (ATOSM34, OSM34, Solyc12g056370)


Aliases : ATOSM34, OSM34, Solyc12g056370

Description : Thaumatin-like protein 1 OS=Manilkara zapota (sp|g5dc91|tlp1_manza : 189.0)


Gene families : OG0000168 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000168_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g056370.1.1
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Adi_g048869 ATLP-3, TLP-3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117380 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g45225 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009930001 No alias Thaumatin-like protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01019840001 ATOSM34, OSM34 Thaumatin-like protein OS=Actinidia deliciosa 0.03 OrthoFinder output from all 47 species
Gb_14847 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_14849 No alias Thaumatin-like protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_25721 ATLP-3, TLP-3 no description available(sp|q5dwg1|crj35_cryja : 318.0) 0.03 OrthoFinder output from all 47 species
Gb_39066 No alias no description available(sp|q5dwg1|crj35_cryja : 386.0) 0.03 OrthoFinder output from all 47 species
LOC_Os03g14030.1 LOC_Os03g14030 Thaumatin-like protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os11g47944.1 LOC_Os11g47944 Thaumatin-like protein OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
LOC_Os12g43490.1 ATOSM34, OSM34,... Thaumatin-like protein OS=Actinidia deliciosa... 0.02 OrthoFinder output from all 47 species
MA_7727763g0010 ATLP-1 Thaumatin-like protein OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ppi_g11842 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003914 No alias not classified & original description: CDS=828-1658 0.04 OrthoFinder output from all 47 species
Smo410984 No alias Thaumatin-like protein 1a OS=Malus domestica 0.02 OrthoFinder output from all 47 species
Solyc12g056360.1.1 ATOSM34, OSM34,... Thaumatin-like protein OS=Actinidia deliciosa... 0.03 OrthoFinder output from all 47 species
Solyc12g056390.1.1 ATOSM34, OSM34,... Pathogenesis-related protein R major form OS=Nicotiana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
InterPro domains Description Start Stop
IPR001938 Thaumatin 145 231
IPR001938 Thaumatin 79 140
IPR001938 Thaumatin 2 66
No external refs found!