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  5. Solyc12g062270.1.1

Solyc12g062270.1.1 (Solyc12g062270)


Aliases : Solyc12g062270

Description : component MED20 of head module of MEDIATOR transcription co-activator complex


Gene families : OG0004094 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004094_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g062270.1.1

Target Alias Description ECC score Gene Family Method Actions
Solyc10g049550.3.1 Solyc10g049550 component MED20 of head module of MEDIATOR transcription... 0.01 OrthoFinder output from all 47 species
Solyc10g054980.3.1 Solyc10g054980 component MED20 of head module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Solyc10g055010.3.1 Solyc10g055010 component MED20 of head module of MEDIATOR transcription... 0.01 OrthoFinder output from all 47 species
Solyc10g055070.1.1 Solyc10g055070 component MED20 of head module of MEDIATOR transcription... 0.01 OrthoFinder output from all 47 species
Solyc10g055130.2.1 Solyc10g055130 component MED20 of head module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Solyc10g055160.3.1 Solyc10g055160 component MED20 of head module of MEDIATOR transcription... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!