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  5. Solyc12g089310.2.1

Solyc12g089310.2.1 (TUB1, Solyc12g089310)


Aliases : TUB1, Solyc12g089310

Description : component beta-Tubulin of alpha-beta-Tubulin heterodimer


Gene families : OG0000152 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000152_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g089310.2.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00135960 TUB6 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.02 OrthoFinder output from all 47 species
Adi_g085232 TUB7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g094247 TUB8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100349 TUB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20343 TUB6 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.02 OrthoFinder output from all 47 species
Aob_g08895 TUB2 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.02 OrthoFinder output from all 47 species
Aop_g20652 TUB6 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.02 OrthoFinder output from all 47 species
Dcu_g31279 TUB8 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.02 OrthoFinder output from all 47 species
Dcu_g45218 TUB8 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.02 OrthoFinder output from all 47 species
Dcu_g45223 TUB6 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.02 OrthoFinder output from all 47 species
Gb_28116 TUB6 component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.02 OrthoFinder output from all 47 species
Gb_29799 TUB6 component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.03 OrthoFinder output from all 47 species
LOC_Os03g56810.1 TUB8, LOC_Os03g56810 component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.01 OrthoFinder output from all 47 species
Msp_g34530 TUB8 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.01 OrthoFinder output from all 47 species
Ore_g07309 TUB8 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.02 OrthoFinder output from all 47 species
Pp3c2_26580V3.1 TUB6, Pp3c2_26580 tubulin beta chain 2 0.01 OrthoFinder output from all 47 species
Sam_g09015 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.02 OrthoFinder output from all 47 species
Sam_g09510 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.03 OrthoFinder output from all 47 species
Sam_g09511 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.03 OrthoFinder output from all 47 species
Spa_g20474 TUB2 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.02 OrthoFinder output from all 47 species
Spa_g47205 TUB7 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.04 OrthoFinder output from all 47 species
Spa_g50620 TUB6 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 265 386
IPR003008 Tubulin_FtsZ_GTPase 3 215
No external refs found!