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  5. Solyc12g096420.2.1

Solyc12g096420.2.1 (Solyc12g096420)


Aliases : Solyc12g096420

Description : Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica (sp|q7xtv7|hip1_orysj : 132.0)


Gene families : OG0000374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g096420.2.1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AT1G17970 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G37150 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Aob_g02207 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Cba_g16424 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dde_g42238 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g02834 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g06088 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
LOC_Os04g51400.2 LOC_Os04g51400 E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Len_g20475 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Lfl_g06590 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g09720 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g17848 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sam_g16722 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g10863 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Tin_g31415 No alias RING-H2-class CTL-subclass E3 ubiquiTin ligase &... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 499 541
No external refs found!