Solyc12g098890.2.1 (Solyc12g098890)

Aliases : Solyc12g098890

Description : component psRPL18 of large ribosomal subunit proteome

Gene families : OG0005910 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005910_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g098890.2.1
Cluster	HCCA: Cluster_133

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00209880	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
AT1G48350	No alias	Ribosomal L18p/L5e family protein	0.22	OrthoFinder output from all 47 species
Adi_g001890	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aev_g28610	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g00228	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Als_g00187	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aob_g03843	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aop_g20657	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0019.g015205	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s2247.g109985	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g10879	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.13G022200.1	Ceric.13G022200	component *(uL18c) of large plastid ribosomal-subunit...	0.25	OrthoFinder output from all 47 species
Cre01.g052100	No alias	Protein biosynthesis.organelle translation...	0.17	OrthoFinder output from all 47 species
Dac_g05557	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dcu_g31625	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Dde_g24129	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g02012	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01017720001	No alias	Protein biosynthesis.organelle translation...	0.13	OrthoFinder output from all 47 species
Gb_12756	No alias	component psRPL18 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
LOC_Os03g61260.1	LOC_Os03g61260	component psRPL18 of large ribosomal subunit proteome	0.24	OrthoFinder output from all 47 species
Len_g30980	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Lfl_g00332	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
MA_7609850g0010	No alias	50S ribosomal protein L18, chloroplastic OS=Arabidopsis...	0.12	OrthoFinder output from all 47 species
Mp6g08500.1	No alias	component psRPL18 of large ribosomal subunit proteome	0.27	OrthoFinder output from all 47 species
Msp_g22178	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Nbi_g15098	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ore_g07264	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ore_g07265	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ppi_g02809	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017759	No alias	EC_3.2 glycosylase & original description: CDS=437-952	0.05	OrthoFinder output from all 47 species
Sam_g19670	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g45370	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Smo143891	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Spa_g00581	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.15	OrthoFinder output from all 47 species
Tin_g00498	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Zm00001e006246_P001	Zm00001e006246	component psRPL18 of large ribosomal subunit proteome	0.24	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005484	Ribosomal_L18	43	162

External Links

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Solyc12g098890.2.1 (Solyc12g098890)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation