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  5. GSVIVT01001177001

GSVIVT01001177001


Description : Cell wall.cell wall proteins.hydroxyproline-rich glycoproteins.arabinogalactan proteins (AGPs).glycoproteins.xylogen-type arabinogalactan protein


Gene families : OG0000195 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000195_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01001177001
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00264910 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G55260 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 OrthoFinder output from all 47 species
Ala_g11719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g15133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G082200.1 Ceric.01G082200 not classified & original description: pacid=50591603... 0.03 OrthoFinder output from all 47 species
GSVIVT01001178001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.06 OrthoFinder output from all 47 species
GSVIVT01001181001 EDA4 No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01018010001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_01917 No alias classical arabinogalactan protein 0.03 OrthoFinder output from all 47 species
Gb_02441 No alias xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
Gb_02446 No alias xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
Gb_08579 No alias xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
Len_g56929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_113140g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_383975g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_50191g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_64802g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_71069g0010 No alias xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
Mp8g18180.1 No alias xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species
Nbi_g04557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g64375 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g073680.4.1 Solyc01g073680 xylogen-type arabinogalactan protein 0.05 OrthoFinder output from all 47 species
Solyc03g005200.3.1 Solyc03g005200 xylogen-type arabinogalactan protein 0.03 OrthoFinder output from all 47 species
Solyc08g079250.4.1 Solyc08g079250 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
BP GO:0006308 DNA catabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 16 105
No external refs found!