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  5. GSVIVT01003650001

GSVIVT01003650001 (OTP80)


Aliases : OTP80

Description : RNA processing.organelle machineries.RNA editing.plastidial RNA editing.OTP80 RNA editing factor


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01003650001
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.04 OrthoFinder output from all 47 species
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00439p00011030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.06 OrthoFinder output from all 47 species
Adi_g026401 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13651 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26367 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34015 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70449 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30154.t1 Aspi01Gene30154 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34816.t1 Aspi01Gene34816 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0054.g033749 No alias not classified & original description: CDS=1-3141 0.03 OrthoFinder output from all 47 species
Azfi_s0242.g059832 No alias not classified & original description: CDS=1-2646 0.03 OrthoFinder output from all 47 species
Azfi_s0257.g060586 No alias not classified & original description: CDS=1-3168 0.03 OrthoFinder output from all 47 species
Cba_g05301 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20724 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G076500.1 Ceric.17G076500 not classified & original description: pacid=50617139... 0.03 OrthoFinder output from all 47 species
Dac_g18571 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g24618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03842 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01009977001 No alias Pentatricopeptide repeat-containing protein At1g43980,... 0.04 OrthoFinder output from all 47 species
GSVIVT01023345001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Gb_05982 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Len_g30657 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_59599g0010 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
MA_6329g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Msp_g26664 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28092 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g37758 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41257 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44335 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g29119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12907 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43234 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013156 No alias not classified & original description: CDS=1-2970 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0208.g025848 No alias not classified & original description: CDS=1-2184 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0233.g026492 No alias not classified & original description: CDS=48-2072 0.03 OrthoFinder output from all 47 species
Smo112044 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
Solyc09g090440.1.1 LPA66, Solyc09g090440 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Spa_g21106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0050662 obsolete coenzyme binding IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 473 597
IPR002885 Pentatricopeptide_repeat 198 245
IPR002885 Pentatricopeptide_repeat 300 347
IPR002885 Pentatricopeptide_repeat 374 399
IPR002885 Pentatricopeptide_repeat 172 193
IPR002885 Pentatricopeptide_repeat 97 124
IPR002885 Pentatricopeptide_repeat 440 468
No external refs found!