GSVIVT01003947001

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01003947001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00176640	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
AMTR_s00030p00156320	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
AMTR_s00160p00038440	HCA2, DOF5.6,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AT2G34140	No alias	Dof-type zinc finger DNA-binding family protein	0.02	OrthoFinder output from all 47 species
AT3G45610	No alias	Dof-type zinc finger DNA-binding family protein	0.04	OrthoFinder output from all 47 species
AT4G38000	DOF4.7	DNA binding with one finger 4.7	0.03	OrthoFinder output from all 47 species
Adi_g007394	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g007399	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g022623	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.31G015700.1	TMO6, Ceric.31G015700	transcription factor *(DOF) & original description:...	0.02	OrthoFinder output from all 47 species
Dcu_g41028	CDF3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g25853	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g16326	No alias	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g31998	CDF2	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Gb_31997	No alias	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
LOC_Os12g38200.1	LOC_Os12g38200	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Len_g14310	OBP3	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g29072	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g46456	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g41707	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g50082	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Solyc06g005130.3.1	Solyc06g005130	transcription factor (DOF)	0.1	OrthoFinder output from all 47 species
Spa_g07056	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e020190_P001	Zm00001e020190	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e035892_P001	CDF2, Zm00001e035892	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	117	174

External Links

No external refs found!

GSVIVT01003947001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation