GSVIVT01007785001 (CNGC18, ATCNGC18)

Aliases : CNGC18, ATCNGC18

Description : Solute transport.channels.VIC superfamily.cyclic nucleotide-gated cation channel (CNGC-type)

Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01007785001

Target	Alias	Description	ECC score	Gene Family Method
AT1G19780	ATCNGC8, CNGC8	cyclic nucleotide gated channel 8	0.05	OrthoFinder output from all 47 species
AT2G24610	ATCNGC14, CNGC14	cyclic nucleotide-gated channel 14	0.03	OrthoFinder output from all 47 species
AT3G48010	ATCNGC16, CNGC16	cyclic nucleotide-gated channel 16	0.05	OrthoFinder output from all 47 species
Ala_g05813	ATCNGC20, CNGC20, CNBT1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
Ala_g13851	ATCNGC14, CNGC14	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
Ala_g24639	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46957.t1	CNGC15,...	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species
Cba_g13170	DND1, ATCNGC2, CNGC2	temperature sensor protein *(CNGC2) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.37G059700.1	CNGC15,...	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
LOC_Os05g42250.1	DND2, CNGC4,...	cyclic nucleotide-gated cation channel (CNGC)	0.05	OrthoFinder output from all 47 species
LOC_Os12g06570.1	CNGC18,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
LOC_Os12g28260.1	CNGC7, ATCNGC7,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
MA_11172g0010	CNGC15, ATCNGC15	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Ore_g20891	DND1, ATCNGC2, CNGC2	cyclic nucleotide-gated cation channel *(CNGC) &...	0.04	OrthoFinder output from all 47 species
Pir_g25266	ATCNGC1, CNGC1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species
Pir_g44974	ATCNGC1, CNGC1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species
Sam_g36093	No alias	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species
Sam_g39902	No alias	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species
Solyc02g086990.4.1	CNGC18,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Solyc02g088560.4.1	DND1, ATCNGC2,...	cyclic nucleotide-gated cation channel (CNGC)....	0.03	OrthoFinder output from all 47 species
Solyc03g116850.3.1	ATCNGC8, CNGC8,...	cyclic nucleotide-gated cation channel (CNGC)	0.05	OrthoFinder output from all 47 species
Solyc06g051920.4.1	ATCNGC1, CNGC1,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Solyc08g069140.4.1	ATCNGC14,...	cyclic nucleotide-gated cation channel (CNGC)	0.04	OrthoFinder output from all 47 species
Spa_g10308	CNGC15, ATCNGC15	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003872	6-phosphofructokinase activity	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008443	phosphofructokinase activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0019200	carbohydrate kinase activity	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000038	regulation of stomatal complex development	IEP	HCCA
BP	GO:2000123	positive regulation of stomatal complex development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000595	cNMP-bd_dom	452	539
IPR005821	Ion_trans_dom	30	352

External Links

No external refs found!

GSVIVT01007785001 (CNGC18, ATCNGC18)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation