GSVIVT01008708001

Description : Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT2 beta subunit

Gene families : OG0005353 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005353_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01008708001
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00149p00026500	evm_27.TU.AmTr_v1...	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.06	OrthoFinder output from all 47 species
AT5G20890	No alias	TCP-1/cpn60 chaperonin family protein	0.08	OrthoFinder output from all 47 species
Aev_g24601	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.02	OrthoFinder output from all 47 species
Aop_g02199	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene25579.t1	Aspi01Gene25579	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.04	OrthoFinder output from all 47 species
Cba_g15823	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.02	OrthoFinder output from all 47 species
Ceric.02G085300.1	Ceric.02G085300	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020903.30	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.03	OrthoFinder output from all 47 species
Cre09.g416750	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.03	OrthoFinder output from all 47 species
Dac_g00849	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.05	OrthoFinder output from all 47 species
Dcu_g14728	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.08	OrthoFinder output from all 47 species
LOC_Os03g42220.1	LOC_Os03g42220	CCT2 subunit beta of CCT chaperonin folding complex	0.12	OrthoFinder output from all 47 species
LOC_Os05g48290.3	LOC_Os05g48290	CCT2 subunit beta of CCT chaperonin folding complex	0.03	OrthoFinder output from all 47 species
MA_10434959g0010	No alias	CCT2 subunit beta of CCT chaperonin folding complex	0.1	OrthoFinder output from all 47 species
Mp5g16030.1	No alias	CCT2 subunit beta of CCT chaperonin folding complex	0.06	OrthoFinder output from all 47 species
Ore_g15486	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.09	OrthoFinder output from all 47 species
Pp3c6_15940V3.1	Pp3c6_15940	TCP-1/cpn60 chaperonin family protein	0.02	OrthoFinder output from all 47 species
Sam_g12467	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.08	OrthoFinder output from all 47 species
Solyc11g069000.2.1	Solyc11g069000	CCT2 subunit beta of CCT chaperonin folding complex	0.06	OrthoFinder output from all 47 species
Spa_g11138	No alias	subunit beta *(CCT2) of CCT chaperonin folding complex &...	0.03	OrthoFinder output from all 47 species
Zm00001e017228_P001	Zm00001e017228	CCT2 subunit beta of CCT chaperonin folding complex	0.13	OrthoFinder output from all 47 species
Zm00001e025595_P002	Zm00001e025595	CCT2 subunit beta of CCT chaperonin folding complex	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/GroEL/TCP-1	30	517

External Links

No external refs found!

GSVIVT01008708001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation