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  5. GSVIVT01009974001

GSVIVT01009974001


Description : Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009974001

Target Alias Description ECC score Gene Family Method Actions
Adi_g005795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035607 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067920 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g095207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101277 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g111214 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g22784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30090 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62553 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09923 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41640 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34744.t1 Aspi01Gene34744 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0090.g042642 No alias not classified & original description: CDS=39-695 0.04 OrthoFinder output from all 47 species
Cba_g19908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29381 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G079700.1 CRR22, Ceric.06G079700 not classified & original description: pacid=50619673... 0.03 OrthoFinder output from all 47 species
Ceric.12G025700.1 Ceric.12G025700 not classified & original description: pacid=50601618... 0.03 OrthoFinder output from all 47 species
Ceric.18G083800.1 Ceric.18G083800 not classified & original description: pacid=50622461... 0.03 OrthoFinder output from all 47 species
Ceric.26G013000.1 Ceric.26G013000 not classified & original description: pacid=50600010... 0.03 OrthoFinder output from all 47 species
Ceric.31G027200.1 OTP86, Ceric.31G027200 not classified & original description: pacid=50574199... 0.03 OrthoFinder output from all 47 species
Ceric.34G000500.1 Ceric.34G000500 not classified & original description: pacid=50623432... 0.03 OrthoFinder output from all 47 species
Dac_g30166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07723 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38653 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_03578 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Gb_08569 OTP84 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_33439 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Len_g23836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05976 OTP82 not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Msp_g18215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24075 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g42976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g43985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30445 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12550 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g48319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63652 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63739 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16145 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16163 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo93321 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc01g081110.4.1 SLO1, Solyc01g081110 Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder output from all 47 species
Solyc01g095160.3.1 Solyc01g095160 Pentatricopeptide repeat-containing protein At4g37170... 0.04 OrthoFinder output from all 47 species
Solyc03g114010.3.1 Solyc03g114010 Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
Solyc06g048900.1.1 Solyc06g048900 Pentatricopeptide repeat-containing protein At2g40720... 0.05 OrthoFinder output from all 47 species
Solyc07g009220.2.1 Solyc07g009220 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
Spa_g21942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g42432 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23111 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g29179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027846_P001 CRR21, Zm00001e027846 RNA editing factor (CRR21) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 102 124
IPR002885 Pentatricopeptide_repeat 128 157
IPR002885 Pentatricopeptide_repeat 635 658
IPR002885 Pentatricopeptide_repeat 228 258
IPR002885 Pentatricopeptide_repeat 462 488
IPR002885 Pentatricopeptide_repeat 535 558
IPR002885 Pentatricopeptide_repeat 301 321
IPR002885 Pentatricopeptide_repeat 329 358
IPR002885 Pentatricopeptide_repeat 360 387
IPR002885 Pentatricopeptide_repeat 560 606
IPR033753 GCV_H/Fam206 814 909
No external refs found!