GSVIVT01009977001


Description : Pentatricopeptide repeat-containing protein At1g43980, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009977001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.1 OrthoFinder output from all 47 species
AMTR_s00092p00064890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.06 OrthoFinder output from all 47 species
Adi_g010912 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g064567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g068892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110646 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13651 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g10918 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g31164 SLO1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36522 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32690 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g31078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010584 No alias not classified & original description: CDS=134-2257 0.05 OrthoFinder output from all 47 species
Azfi_s0035.g025464 No alias not classified & original description: CDS=1-2154 0.03 OrthoFinder output from all 47 species
Azfi_s0351.g066580 No alias not classified & original description: CDS=1-3804 0.03 OrthoFinder output from all 47 species
Cba_g05902 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35114 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g02368 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g09912 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003650001 OTP80 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Gb_05982 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
LOC_Os10g40920.1 LOC_Os10g40920 RNA editing factor (MEF13) 0.03 OrthoFinder output from all 47 species
Len_g04760 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g30657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07048 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g32796 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.14 OrthoFinder output from all 47 species
Msp_g17577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g37758 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41257 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g45780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25097 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g40763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43234 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g57991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15704 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16163 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29968 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06929 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11085 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13834 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53917 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002062 No alias not classified & original description: CDS=1-1716 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019123 No alias not classified & original description: CDS=1-462 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022190 No alias not classified & original description: CDS=1-2487 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023175 No alias not classified & original description: CDS=1-2640 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023738 CRR2 not classified & original description: CDS=3678-5561 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0233.g026492 No alias not classified & original description: CDS=48-2072 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0262.g026911 REME1 not classified & original description: CDS=1-1512 0.03 OrthoFinder output from all 47 species
Smo107700 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Smo112044 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.06 OrthoFinder output from all 47 species
Smo130453 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Smo136134 EMB2261 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Smo136241 EMB2758 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Smo99677 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Zm00001e032581_P001 Zm00001e032581 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 183 208
IPR002885 Pentatricopeptide_repeat 78 121
No external refs found!