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  5. GSVIVT01010223001

GSVIVT01010223001


Description : Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010223001
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Aev_g44680 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g18613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g19914 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66060.t1 Aspi01Gene66060 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.23G046500.1 Ceric.23G046500 not classified & original description: pacid=50610423... 0.04 OrthoFinder output from all 47 species
Dac_g35258 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_20168g0010 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.03 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11835 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22081 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020215 No alias not classified & original description: CDS=1-5316 0.03 OrthoFinder output from all 47 species
Solyc03g116840.3.1 Solyc03g116840 RNA editing factor (OTP81) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 341 366
IPR002885 Pentatricopeptide_repeat 155 179
IPR032867 DYW_dom 440 564
IPR002885 Pentatricopeptide_repeat 81 129
IPR002885 Pentatricopeptide_repeat 267 314
No external refs found!