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  5. GSVIVT01010358001

GSVIVT01010358001


Description : 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010358001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Als_g02463 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20640 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene03052.t1 OPCL1, Aspi01Gene03052 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_19726 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_33460 OPCL1 OPC-8:CoA synthetase 0.04 OrthoFinder output from all 47 species
MA_135674g0010 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_199593g0010 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_4881g0010 OPCL1 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp.... 0.07 OrthoFinder output from all 47 species
MA_8552247g0010 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ore_g07522 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10223 OPCL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c3_24370V3.1 Pp3c3_24370 AMP-dependent synthetase and ligase family protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015443 No alias not classified & original description: CDS=406-2094 0.02 OrthoFinder output from all 47 species
Smo177466 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Smo429785 No alias 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
Solyc03g111170.3.1 Solyc03g111170 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e004865_P001 Zm00001e004865 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp.... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR025110 AMP-bd_C 456 531
IPR000873 AMP-dep_Synth/Lig_com 59 447
No external refs found!