1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01010625001

GSVIVT01010625001 (LBD23)


Aliases : LBD23

Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010625001
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT1G07900 LBD1 LOB domain-containing protein 1 0.04 OrthoFinder output from all 47 species
AT4G00220 LBD30, JLO Lateral organ boundaries (LOB) domain family protein 0.02 OrthoFinder output from all 47 species
Aob_g10411 LOB AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g64401 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene41937.t1 AS2, Aspi01Gene41937 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48773.t1 LBD15, ASL11,... AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0225.g058902 LBD4 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.02G060200.1 LBD15, ASL11,... AS2/LOB-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dac_g34747 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14167 LOB AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43172 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003546001 LBD10 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
GSVIVT01003547001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01016333001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.08 OrthoFinder output from all 47 species
GSVIVT01018486001 ASL1, LBD36 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.13 OrthoFinder output from all 47 species
GSVIVT01032592001 LBD27, SCP RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 OrthoFinder output from all 47 species
Gb_10524 LBD15, ASL11 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
Gb_14010 LBD20 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Gb_19383 LBD11 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Gb_23688 LBD15, ASL11 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Gb_29853 LBD4 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Gb_39343 LBD20 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
LOC_Os02g57490.1 LBD16, ASL18,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_127139g0010 LBD4 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Nbi_g28878 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18089 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g19686 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g112430.1.1 LOB, Solyc03g112430 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Solyc05g048740.3.1 LBD11, Solyc05g048740 transcription factor (AS2/LOB) 0.07 OrthoFinder output from all 47 species
Solyc06g071660.3.1 LOB, Solyc06g071660 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
Solyc06g082310.3.1 LBD12, ASL5,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Spa_g46968 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03878 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e019686_P001 LBD20, Zm00001e019686 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e028582_P007 AS2, Zm00001e028582 transcription factor (AS2/LOB) 0.09 OrthoFinder output from all 47 species
Zm00001e030195_P001 LBD2, Zm00001e030195 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e038429_P001 LBD11, Zm00001e038429 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 4 101
No external refs found!