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  5. GSVIVT01011415001

GSVIVT01011415001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.zf-HD transcription factor


Gene families : OG0000204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000204_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011415001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00261620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Adi_g122940 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42326 ATHB22, MEE68, ZHD2, HB22 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11999 AtHB31, ZHD4, HB31 zf-HD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63642.t1 AtHB31, ZHD4,... zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12626 ATHB22, MEE68, ZHD2, HB22 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G068100.1 ATHB22, MEE68,... zf-HD-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g37208 AtHB33, ZHD5, HB33 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06513 ZHD3, HB21, ATHB21, ZFHD4 zf-HD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_18045 AtHB31, ZHD4, HB31 transcription factor (zf-HD) 0.02 OrthoFinder output from all 47 species
LOC_Os04g35500.1 ATHB22, MEE68,... transcription factor (zf-HD) 0.02 OrthoFinder output from all 47 species
Lfl_g19325 AtHB31, ZHD4, HB31 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_12314g0010 MIF2 transcription factor (zf-HD) 0.04 OrthoFinder output from all 47 species
MA_144114g0010 MIF2 transcription factor (zf-HD) 0.03 OrthoFinder output from all 47 species
MA_147745g0020 MIF2 transcription factor (zf-HD) 0.03 OrthoFinder output from all 47 species
MA_32594g0010 MIF2 transcription factor (zf-HD) 0.02 OrthoFinder output from all 47 species
MA_461761g0010 AtHB31, ZHD4, HB31 transcription factor (zf-HD) 0.02 OrthoFinder output from all 47 species
MA_91212g0010 MIF2 transcription factor (zf-HD) 0.03 OrthoFinder output from all 47 species
Mp8g08190.1 ATHB22, MEE68, ZHD2, HB22 transcription factor (zf-HD) 0.03 OrthoFinder output from all 47 species
Solyc02g067330.1.1 MIF2, Solyc02g067330 transcription factor (zf-HD) 0.02 OrthoFinder output from all 47 species
Solyc03g116070.1.1 MIF3, Solyc03g116070 transcription factor (zf-HD) 0.02 OrthoFinder output from all 47 species
Solyc05g007580.1.1 ATHB29, ZFHD1,... transcription factor (zf-HD) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 27 79
No external refs found!