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  5. GSVIVT01011896001

GSVIVT01011896001 (LBD42)


Aliases : LBD42

Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0001073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011896001
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00088960 LBD41,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
AMTR_s00137p00051070 LBD39,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
AMTR_s00137p00087340 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
AT1G68510 LBD42 LOB domain-containing protein 42 0.03 OrthoFinder output from all 47 species
Adi_g086054 LBD38 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g01892 LBD38 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51765 LBD38 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g20695 LBD37, ASL39 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030772 LBD38 AS2/LOB-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g13473 LBD38 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008284001 LBD40 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01031035001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.07 OrthoFinder output from all 47 species
LOC_Os01g03890.1 LBD41, LOC_Os01g03890 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
LOC_Os01g32770.1 LBD41, LOC_Os01g32770 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g33090.1 LOC_Os03g33090 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
MA_223267g0010 LBD40 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_70989g0010 LBD40 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
MA_75731g0010 LBD40 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
MA_80122g0010 LBD42 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Ppi_g32695 LBD38 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g077990.3.1 LBD38, Solyc04g077990 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Solyc05g009320.4.1 LBD41, Solyc05g009320 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e005129_P001 LBD37, ASL39,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e017028_P001 LBD40, Zm00001e017028 transcription factor (AS2/LOB) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004506 squalene monooxygenase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 4 97
No external refs found!