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  5. GSVIVT01011897001

GSVIVT01011897001


Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011897001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT1G25440 No alias B-box type zinc finger protein with CCT domain 0.04 OrthoFinder output from all 47 species
AT1G49130 No alias B-box type zinc finger protein with CCT domain 0.03 OrthoFinder output from all 47 species
AT1G68520 No alias B-box type zinc finger protein with CCT domain 0.05 OrthoFinder output from all 47 species
AT1G73870 No alias B-box type zinc finger protein with CCT domain 0.03 OrthoFinder output from all 47 species
AT4G25990 CIL CCT motif family protein 0.03 OrthoFinder output from all 47 species
Aev_g24424 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g34755 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08686 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04399 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30657 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09765 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0076.g037937 No alias CMF transcription factor & original description: CDS=1-2013 0.03 OrthoFinder output from all 47 species
Azfi_s0172.g055744 No alias not classified & original description: CDS=1-1599 0.03 OrthoFinder output from all 47 species
Cba_g13442 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20220 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G076600.1 Ceric.16G076600 not classified & original description: pacid=50589566... 0.02 OrthoFinder output from all 47 species
Dac_g09127 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04980 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_02486 No alias transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
LOC_Os02g49880.1 LOC_Os02g49880 transcription factor (BBX-CO) 0.09 OrthoFinder output from all 47 species
LOC_Os03g50310.1 LOC_Os03g50310 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
LOC_Os06g15330.1 LOC_Os06g15330 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
Len_g09104 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g31511 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06124 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06152 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g17180 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47217 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g14113 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g24194 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16447 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18512 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14853 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g15539 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19039 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13174 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g17788 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0152.g023452 No alias BBX class-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc04g007210.3.1 Solyc04g007210 transcription factor (BBX-CO) 0.05 OrthoFinder output from all 47 species
Solyc05g009310.3.1 Solyc05g009310 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Solyc07g008540.3.1 CIA2, Solyc07g008540 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Zm00001e012194_P001 Zm00001e012194 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Zm00001e015732_P002 Zm00001e015732 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
Zm00001e030952_P002 Zm00001e030952 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Zm00001e036760_P001 Zm00001e036760 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 376 418
IPR000315 Znf_B-box 16 59
No external refs found!