1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01013827001

GSVIVT01013827001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013827001

Target Alias Description ECC score Gene Family Method Actions
Als_g12101 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13715 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g56348 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07992 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11491 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16751 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20021 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g22415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g56742 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63093.t1 Aspi01Gene63093 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.13G038200.1 Ceric.13G038200 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g05020 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g07534 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11068 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g31652 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014641001 QRT1 Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01023786001 ATPE11, PE11 Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
LOC_Os09g39760.1 LOC_Os09g39760 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Len_g07516 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19805 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
MA_16389g0020 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Msp_g38949 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38524 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ppi_g24799 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61465 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020122 No alias not classified & original description: CDS=269-877 0.03 OrthoFinder output from all 47 species
Sam_g25180 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Spa_g47305 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15602 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g36990 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g36991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43829 No alias pecTin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002891_P001 Zm00001e002891 pectin methylesterase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 70 355
No external refs found!