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  5. GSVIVT01013832001

GSVIVT01013832001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013832001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
AT1G05310 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G47500 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g105814 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g10289 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g41068 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g12101 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Als_g56348 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g02507 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07992 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g16751 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g20021 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g21373 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g22415 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g30459 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g56742 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g69965 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene05795.t1 Aspi01Gene05795 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene59341.t1 Aspi01Gene59341 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene59342.t1 Aspi01Gene59342 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59344.t1 Aspi01Gene59344 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59346.t1 Aspi01Gene59346 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70538.t1 Aspi01Gene70538 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene71978.t1 Aspi01Gene71978 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0006.g010419 No alias pectin methylesterase & original description: CDS=155-1288 0.02 OrthoFinder output from all 47 species
Cba_g05738 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.14G007600.1 Ceric.14G007600 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G035900.1 Ceric.39G035900 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g05020 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g09998 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11820 No alias EC_3.1 hydrolase acting on ester bond & original... 0.01 OrthoFinder output from all 47 species
Dcu_g06266 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g11350 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11729 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g14896 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g42904 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g44261 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g27753 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46321 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g26229 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
Gb_32012 QRT1 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os04g46740.1 LOC_Os04g46740 pectin methylesterase 0.05 OrthoFinder output from all 47 species
Len_g07605 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Len_g53837 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g56779 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
MA_66089g0010 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Msp_g06289 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00669 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g03614 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g08076 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24244 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27443 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g34778 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25737 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40521 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02205 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g20339 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g21379 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g25901 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g31507 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015880 No alias pectin methylesterase & original description: CDS=354-1487 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025813 No alias pectin methylesterase & original description: CDS=1-1236 0.01 OrthoFinder output from all 47 species
Sam_g11685 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Smo101090 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
Solyc01g109740.3.1 ATPE11, PE11,... pectin methylesterase 0.01 OrthoFinder output from all 47 species
Spa_g47305 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g49901 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01655 No alias pecTin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07049 No alias pecTin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15602 No alias pecTin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19866 No alias pecTin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g20547 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g36990 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g36991 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g43829 No alias pecTin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 69 354
No external refs found!