Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP10 assembly factor
Gene families : OG0003994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003994_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01013976001 | |
| Cluster | HCCA: Cluster_75 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00111p00089410 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.04 | OrthoFinder output from all 47 species | |
| AT3G06530 | No alias | ARM repeat superfamily protein | 0.18 | OrthoFinder output from all 47 species | |
| Ala_g19835 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Aop_g39223 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Aspi01Gene50223.t1 | Aspi01Gene50223 | SSU processome assembly factor *(UTP10) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g23591 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.35G057300.1 | Ceric.35G057300 | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cre12.g548000 | No alias | Uncharacterized protein At3g06530 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g07784 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g26136 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_31968 | No alias | Uncharacterized protein At3g06530 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_31975 | No alias | SSU processome assembly factor (UTP10) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g46310.1 | LOC_Os04g46310 | SSU processome assembly factor (UTP10) | 0.13 | OrthoFinder output from all 47 species | |
| Lfl_g18330 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.05 | OrthoFinder output from all 47 species | |
| MA_10431891g0010 | No alias | Uncharacterized protein At3g06530 OS=Arabidopsis... | 0.07 | OrthoFinder output from all 47 species | |
| MA_735g0010 | No alias | Uncharacterized protein At3g06530 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Mp1g06160.1 | No alias | SSU processome assembly factor (UTP10) | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g32298 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g04467 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g27886 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g40580 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Smo438493 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc03g093480.3.1 | Solyc03g093480 | SSU processome assembly factor (UTP10) | 0.12 | OrthoFinder output from all 47 species | |
| Spa_g26502 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g20111 | No alias | SSU processome assembly factor *(UTP10) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e016831_P001 | Zm00001e016831 | SSU processome assembly factor (UTP10) | 0.19 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| BP | GO:0002097 | tRNA wobble base modification | IEP | HCCA |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | HCCA |
| MF | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| CC | GO:0033588 | elongator holoenzyme complex | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| No external refs found! |
