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  5. GSVIVT01015022001

GSVIVT01015022001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015022001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AT1G05310 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G36710 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G24130 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G19730 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G26810 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g01193 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18114 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19093 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20976 QRT1 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37035 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40489 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20050 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24708 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26631 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04100 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02507 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20106 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g58922 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69965 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24083.t2 Aspi01Gene24083 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene31809.t1 Aspi01Gene31809 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene31809.t2 Aspi01Gene31809 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene59345.t1 Aspi01Gene59345 pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene70538.t1 Aspi01Gene70538 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0103.g044651 No alias pectin methylesterase & original description: CDS=1-1083 0.03 OrthoFinder output from all 47 species
Cba_g05738 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G008900.1 Ceric.03G008900 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.05G031400.1 Ceric.05G031400 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G071300.1 Ceric.10G071300 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G076400.1 Ceric.10G076400 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G007100.1 Ceric.11G007100 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.13G037000.1 Ceric.13G037000 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.13G037800.1 Ceric.13G037800 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.29G054600.1 Ceric.29G054600 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.35G046900.1 Ceric.35G046900 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g05020 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06266 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g14896 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g16361 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g42904 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g51244 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g25225 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g27753 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g38152 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46321 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09802 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18839 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31652 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013838001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 OrthoFinder output from all 47 species
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Gb_01460 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Gb_23209 No alias pectin methylesterase 0.06 OrthoFinder output from all 47 species
Gb_32012 QRT1 pectin methylesterase 0.06 OrthoFinder output from all 47 species
LOC_Os01g19440.1 LOC_Os01g19440 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os01g44340.1 ATPE11, PE11,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Len_g07516 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40175 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
MA_10267810g0010 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_10428207g0020 No alias Probable pectinesterase 53 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_19196g0010 ATPE11, PE11 pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_66089g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_87592g0010 ATPE11, PE11 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp2g01420.1 No alias pectin methylesterase 0.05 OrthoFinder output from all 47 species
Mp3g01170.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Msp_g06323 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g38949 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44845 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05557 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26065 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g35988 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01944 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g25901 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31507 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61465 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63851 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008023 No alias pectin methylesterase & original description: CDS=361-1506 0.03 OrthoFinder output from all 47 species
Sam_g36158 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36779 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g44288 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Solyc01g109740.3.1 ATPE11, PE11,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc02g075620.4.1 Solyc02g075620 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc07g043240.4.1 Solyc07g043240 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Spa_g47305 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35486 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g36990 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g41171 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43829 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002891_P001 Zm00001e002891 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Zm00001e027944_P002 ATPE11, PE11,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e033546_P001 Zm00001e033546 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 97 381
No external refs found!