1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01016018001

GSVIVT01016018001


Description : Photosystem I assembly protein Ycf3 OS=Nicotiana tabacum


Gene families : OG0006366 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006366_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016018001

Target Alias Description ECC score Gene Family Method Actions
ATCG00360 YCF3 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g34996 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.07 OrthoFinder output from all 47 species
Als_g33718 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.04 OrthoFinder output from all 47 species
Ceric.02G013500.1 YCF3, Ceric.02G013500 protein involved in PS-I assembly *(YCF3) & original... 0.04 OrthoFinder output from all 47 species
Ceric.1Z022600.1 YCF3, Ceric.1Z022600 protein involved in PS-I assembly *(YCF3) & original... 0.03 OrthoFinder output from all 47 species
Ceric.26G038300.1 YCF3, Ceric.26G038300 not classified & original description: pacid=50599550... 0.04 OrthoFinder output from all 47 species
Ceric.29G032800.1 YCF3, Ceric.29G032800 protein involved in PS-I assembly *(YCF3) & original... 0.05 OrthoFinder output from all 47 species
Ceric.33G023800.1 YCF3, Ceric.33G023800 protein involved in PS-I assembly *(YCF3) & original... 0.04 OrthoFinder output from all 47 species
LOC_Os01g57966.1 YCF3, LOC_Os01g57966 YCF3 protein involved in PS-I assembly 0.08 OrthoFinder output from all 47 species
LOC_Os04g16736.1 YCF3, LOC_Os04g16736 YCF3 protein involved in PS-I assembly 0.08 OrthoFinder output from all 47 species
LOC_Os10g21254.1 YCF3, LOC_Os10g21254 YCF3 protein involved in PS-I assembly 0.08 OrthoFinder output from all 47 species
LOC_Os10g38216.1 YCF3, LOC_Os10g38216 YCF3 protein involved in PS-I assembly 0.08 OrthoFinder output from all 47 species
Lfl_g14015 YCF3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19607 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.06 OrthoFinder output from all 47 species
Ore_g20105 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.02 OrthoFinder output from all 47 species
Pir_g08805 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.02 OrthoFinder output from all 47 species
Solyc00g500058.1.1 YCF3, Solyc00g500058 YCF3 protein involved in PS-I assembly 0.04 OrthoFinder output from all 47 species
Solyc00g500059.1.1 Solyc00g500059 Photosystem I assembly protein Ycf3 OS=Solanum... 0.03 OrthoFinder output from all 47 species
Solyc00g500144.1.1 Solyc00g500144 Photosystem I assembly protein Ycf3 OS=Solanum... 0.03 OrthoFinder output from all 47 species
Solyc00g500210.1.1 YCF3, Solyc00g500210 YCF3 protein involved in PS-I assembly 0.04 OrthoFinder output from all 47 species
Solyc00g500211.1.1 Solyc00g500211 Photosystem I assembly protein Ycf3 OS=Solanum... 0.03 OrthoFinder output from all 47 species
Solyc09g015320.3.1 PSAA, Solyc09g015320 Photosystem I P700 chlorophyll a apoprotein A1... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0019843 rRNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001440 TPR_1 31 61
No external refs found!