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  5. GSVIVT01017719001

GSVIVT01017719001


Description : DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica


Gene families : OG0004236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004236_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017719001

Target Alias Description ECC score Gene Family Method Actions
AT3G06980 No alias DEA(D/H)-box RNA helicase family protein 0.16 OrthoFinder output from all 47 species
Adi_g056846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g10864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G050700.1 Ceric.28G050700 not classified & original description: pacid=50570551... 0.07 OrthoFinder output from all 47 species
Cre10.g436650 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g32150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07014 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g22864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_19265 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
LOC_Os03g01830.1 LOC_Os03g01830 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.11 OrthoFinder output from all 47 species
Len_g02379 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g37545 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Mp8g11020.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis... 0.13 OrthoFinder output from all 47 species
Nbi_g13305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66303 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g33516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005945 No alias not classified & original description: CDS=228-2279 0.05 OrthoFinder output from all 47 species
Sam_g16562 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo142751 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Smo403724 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc11g045180.3.1 Solyc11g045180 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Spa_g15666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e039095_P002 Zm00001e039095 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 489 605
IPR011545 DEAD/DEAH_box_helicase_dom 266 436
No external refs found!