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  5. GSVIVT01018823001

GSVIVT01018823001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018823001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00085870 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AT2G36710 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G47500 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G61680 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g18114 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g37035 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g40489 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g25188 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08007 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Als_g12101 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g01243 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g11491 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g58922 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene16818.t1 Aspi01Gene16818 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20189.t1 Aspi01Gene20189 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene55625.t1 Aspi01Gene55625 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene72300.t1 Aspi01Gene72300 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene72301.t1 Aspi01Gene72301 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0033.g024992 No alias pectin methylesterase & original description: CDS=226-1431 0.01 OrthoFinder output from all 47 species
Azfi_s0040.g026612 No alias pectin methylesterase & original description: CDS=139-1269 0.02 OrthoFinder output from all 47 species
Azfi_s0103.g044651 No alias pectin methylesterase & original description: CDS=1-1083 0.01 OrthoFinder output from all 47 species
Azfi_s0516.g074982 No alias not classified & original description: CDS=1-498 0.02 OrthoFinder output from all 47 species
Ceric.10G071200.1 Ceric.10G071200 pectin methylesterase & original description:... 0.08 OrthoFinder output from all 47 species
Ceric.10G072300.1 Ceric.10G072300 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G076400.1 Ceric.10G076400 pectin methylesterase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.11G006300.1 Ceric.11G006300 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G006400.1 Ceric.11G006400 pectin methylesterase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.11G006500.1 Ceric.11G006500 pectin methylesterase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.11G007100.1 Ceric.11G007100 pectin methylesterase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.11G007600.1 Ceric.11G007600 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G007800.1 Ceric.11G007800 not classified & original description: pacid=50595757... 0.03 OrthoFinder output from all 47 species
Ceric.11G007900.1 Ceric.11G007900 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G008400.1 Ceric.11G008400 pectin methylesterase & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.13G037700.1 Ceric.13G037700 pectin methylesterase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.15G045300.1 Ceric.15G045300 not classified & original description: pacid=50640021... 0.03 OrthoFinder output from all 47 species
Ceric.16G044000.1 Ceric.16G044000 pectin methylesterase & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.19G035800.1 Ceric.19G035800 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.1Z171200.1 Ceric.1Z171200 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.21G056200.1 Ceric.21G056200 pectin methylesterase & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.24G024700.1 Ceric.24G024700 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.29G054600.1 Ceric.29G054600 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.37G019000.1 Ceric.37G019000 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g00830 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g05020 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g11820 No alias EC_3.1 hydrolase acting on ester bond & original... 0.01 OrthoFinder output from all 47 species
Dac_g17627 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23541 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11729 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g51672 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09802 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g19236 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Gb_39595 No alias pectin methylesterase 0.05 OrthoFinder output from all 47 species
LOC_Os01g19440.1 LOC_Os01g19440 pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os05g44600.1 LOC_Os05g44600 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Len_g02282 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Len_g04249 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07516 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g07605 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Len_g53837 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
MA_10267810g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_112715g0010 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
MA_16389g0020 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_32575g0010 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
MA_66089g0010 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Mp4g01190.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Msp_g10586 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g02928 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g03614 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g08076 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24244 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25737 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43683 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02205 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g01944 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18465 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g24799 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g59766 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004950 No alias pectin methylesterase & original description: CDS=716-1846 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016099 No alias pectin methylesterase & original description: CDS=1-1224 0.01 OrthoFinder output from all 47 species
Sam_g50211 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g053680.1.1 Solyc05g053680 pectin methylesterase 0.01 OrthoFinder output from all 47 species
Solyc12g098340.2.1 Solyc12g098340 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Spa_g10100 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29524 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g37234 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38344 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g40449 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g41355 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49578 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027944_P002 ATPE11, PE11,... pectin methylesterase 0.01 OrthoFinder output from all 47 species
Zm00001e033546_P001 Zm00001e033546 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 67 357
No external refs found!