GSVIVT01018951001 (HAN, MNP, GATA18)

Aliases : HAN, MNP, GATA18

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor

Gene families : OG0000100 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01018951001

Target	Alias	Description	ECC score	Gene Family Method
AT4G26150	GATA22, CGA1, GNL	cytokinin-responsive gata factor 1	0.03	OrthoFinder output from all 47 species
Adi_g022369	GATA4	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g01113	GATA5	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g15604	GATA6	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g09937	GNC, GATA21	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene06728.t1	GNC, GATA21,...	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene12734.t1	GATA5, Aspi01Gene12734	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene22142.t1	BME3-ZF, BME3,...	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene35992.t1	GATA23, Aspi01Gene35992	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene57616.t1	GATA5, Aspi01Gene57616	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene64140.t1	GATA4, Aspi01Gene64140	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g02619	GATA2	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g04557	GATA9	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g05826	GATA9	transcription factor *(A/B-GATA) & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.07G072600.1	GATA9, Ceric.07G072600	transcription factor *(A/B-GATA) & original description:...	0.03	OrthoFinder output from all 47 species
Cre01.g025050	GATA23	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
Dac_g10781	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g15306	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g50721	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g22706	GATA4	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g26857	GATA12	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01035048001	GATA15	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
LOC_Os02g43150.1	GATA5, LOC_Os02g43150	transcription factor (GATA)	0.06	OrthoFinder output from all 47 species
LOC_Os05g50270.1	GATA19, LOC_Os05g50270	transcription factor (GATA)	0.06	OrthoFinder output from all 47 species
LOC_Os10g40810.1	GATA2, LOC_Os10g40810	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
LOC_Os12g42970.1	GATA4, LOC_Os12g42970	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Lfl_g03183	GATA4	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Mp1g03950.1	GATA9	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Ore_g40724	GATA9	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g06393	GATA6	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g12075	GATA9	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015681	GATA12	transcription factor *(A/B-GATA) & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016909	GATA9	transcription factor *(A/B-GATA) & original description:...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023073	GATA9	transcription factor *(A/B-GATA) & original description:...	0.04	OrthoFinder output from all 47 species
Sam_g13371	No alias	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g085190.2.1	HAN, MNP,...	transcription factor (GATA)	0.05	OrthoFinder output from all 47 species
Solyc03g033660.4.1	GATA5, Solyc03g033660	transcription factor (GATA)	0.14	OrthoFinder output from all 47 species
Spa_g06056	GNC, GATA21	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g12632	GATA12	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g55775	GATA12	transcription factor *(A/B-GATA) & original description: none	0.06	OrthoFinder output from all 47 species
Zm00001e009216_P001	GATA4, Zm00001e009216	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e015260_P001	GATA5, Zm00001e015260	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Zm00001e026560_P001	GATA20, Zm00001e026560	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e026601_P001	GATA20, Zm00001e026601	transcription factor (GATA)	0.04	OrthoFinder output from all 47 species
Zm00001e032513_P001	Zm00001e032513	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Zm00001e037876_P002	GATA4, Zm00001e037876	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	113	147

External Links

No external refs found!

GSVIVT01018951001 (HAN, MNP, GATA18)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation