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  5. GSVIVT01019000001

GSVIVT01019000001


Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0000265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01019000001

Target Alias Description ECC score Gene Family Method Actions
AT1G68130 IDD14, AtIDD14 indeterminate(ID)-domain 14 0.05 OrthoFinder output from all 47 species
AT3G13810 IDD11, AtIDD11 indeterminate(ID)-domain 11 0.07 OrthoFinder output from all 47 species
Adi_g021881 IDD2, AtIDD2 C2H2 subclass IDD transcription factor & original... 0.02 OrthoFinder output from all 47 species
Adi_g048017 AtIDD12, IDD12 C2H2 subclass IDD transcription factor & original... 0.02 OrthoFinder output from all 47 species
Adi_g099246 NUC not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02498 IDD2, AtIDD2 C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g18228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18581 JKD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g56444 MGP C2H2 subclass IDD transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene34150.t1 IDD2, AtIDD2,... C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.17G030700.1 MGP, Ceric.17G030700 C2H2 subclass IDD transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ehy_g18226 IDD2, AtIDD2 C2H2 subclass IDD transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01010961001 MGP RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
GSVIVT01025658001 JKD RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 OrthoFinder output from all 47 species
LOC_Os03g10140.1 LOC_Os03g10140 C2H2 zinc finger transcription factor. elicitor peptide... 0.04 OrthoFinder output from all 47 species
Len_g16369 AtIDD12, IDD12 C2H2 subclass IDD transcription factor & original... 0.04 OrthoFinder output from all 47 species
Lfl_g28185 MGP C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Mp2g24110.1 MGP C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Pnu_g28092 IDD14, AtIDD14 C2H2 subclass IDD transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0107.g020376 IDD2, AtIDD2 C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g45389 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g099340.3.1 MGP, Solyc01g099340 C2H2 zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Spa_g39904 MGP C2H2 subclass IDD transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e026143_P001 MGP, Zm00001e026143 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e034898_P001 IDD4, AtIDD4,... C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR013087 Znf_C2H2_type 66 88
No external refs found!