GSVIVT01019355001

Description : 50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea

Gene families : OG0005291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005291_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01019355001
Cluster	HCCA: Cluster_79

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00166020	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
AT2G43030	No alias	Ribosomal protein L3 family protein	0.23	OrthoFinder output from all 47 species
Adi_g022051	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Adi_g022052	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Aev_g05882	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ala_g05869	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Als_g10884	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aob_g03365	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Aop_g14058	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aop_g26780	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Aspi01Gene69382.t1	Aspi01Gene69382	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0242.g059806	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Cba_g03036	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.08G072800.1	Ceric.08G072800	component *(uL3c) of large plastid ribosomal-subunit...	0.19	OrthoFinder output from all 47 species
Cre48.g761197	No alias	Protein biosynthesis.organelle translation...	0.12	OrthoFinder output from all 47 species
Dac_g08147	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g02623	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.14	OrthoFinder output from all 47 species
Dde_g02079	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g00510	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Gb_26251	No alias	component psRPL3 of large ribosomal subunit proteome	0.17	OrthoFinder output from all 47 species
LOC_Os02g04460.1	LOC_Os02g04460	component psRPL3 of large ribosomal subunit proteome	0.26	OrthoFinder output from all 47 species
Len_g00379	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Lfl_g10299	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
MA_10432831g0010	No alias	component psRPL3 of large ribosomal subunit proteome	0.16	OrthoFinder output from all 47 species
Mp1g03320.1	No alias	component psRPL3 of large ribosomal subunit proteome	0.24	OrthoFinder output from all 47 species
Msp_g02349	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Nbi_g00713	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Ore_g11263	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pir_g05542	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Pp3c16_1020V3.1	Pp3c16_1020	Ribosomal protein L3 family protein	0.05	OrthoFinder output from all 47 species
Pp3c6_28830V3.1	Pp3c6_28830	Ribosomal protein L3 family protein	0.06	OrthoFinder output from all 47 species
Ppi_g07342	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015211	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Sam_g11021	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Sam_g24523	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Sam_g38828	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Smo430901	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Solyc06g051200.3.1	Solyc06g051200	component psRPL3 of large ribosomal subunit proteome	0.2	OrthoFinder output from all 47 species
Spa_g05012	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.16	OrthoFinder output from all 47 species
Tin_g06461	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
MF	GO:0046406	magnesium protoporphyrin IX methyltransferase activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_L3	20	75

External Links

No external refs found!

GSVIVT01019355001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation