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  5. GSVIVT01020677001

GSVIVT01020677001


Description : Maturase K OS=Vitis vinifera


Gene families : OG0009239 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020677001
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
ATCG00040 MATK maturase K 0.12 OrthoFinder output from all 47 species
Aev_g12869 MATK maturase *(MatK) & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g16220 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.02G011900.1 Ceric.02G011900 not classified & original description: pacid=50586159... 0.06 OrthoFinder output from all 47 species
Ceric.1Z023400.1 Ceric.1Z023400 not classified & original description: pacid=50586366... 0.03 OrthoFinder output from all 47 species
Ceric.1Z116700.1 Ceric.1Z116700 not classified & original description: pacid=50576996... 0.02 OrthoFinder output from all 47 species
Ceric.29G005800.1 Ceric.29G005800 not classified & original description: pacid=50625652... 0.06 OrthoFinder output from all 47 species
Gb_01780 MATK maturase (MatK) 0.05 OrthoFinder output from all 47 species
LOC_Os04g16734.1 MATK, LOC_Os04g16734 maturase (MatK) 0.15 OrthoFinder output from all 47 species
LOC_Os10g21194.1 MATK, LOC_Os10g21194 maturase (MatK) 0.07 OrthoFinder output from all 47 species
Lfl_g12823 MATK maturase *(MatK) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g01567 MATK maturase *(MatK) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g14902 MATK not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc00g500048.1.1 MATK, Solyc00g500048 maturase (MatK) 0.06 OrthoFinder output from all 47 species
Solyc00g500131.1.1 MATK, Solyc00g500131 maturase (MatK) 0.06 OrthoFinder output from all 47 species
Solyc00g500201.1.1 MATK, Solyc00g500201 maturase (MatK) 0.06 OrthoFinder output from all 47 species
Solyc00g500295.1.1 MATK, Solyc00g500295 maturase (MatK) 0.06 OrthoFinder output from all 47 species
Solyc00g500330.1.1 MATK, Solyc00g500330 maturase (MatK) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR024937 Domain_X 1 53
No external refs found!