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  5. GSVIVT01020856001

GSVIVT01020856001


Description : Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT5 epsilon subunit


Gene families : OG0005131 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020856001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00173980 evm_27.TU.AmTr_v1... Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.08 OrthoFinder output from all 47 species
AT1G24510 No alias TCP-1/cpn60 chaperonin family protein 0.11 OrthoFinder output from all 47 species
Adi_g011435 No alias subunit epsilon *(CCT5) of CCT chaperonin folding... 0.03 OrthoFinder output from all 47 species
Als_g14768 No alias subunit epsilon *(CCT5) of CCT chaperonin folding... 0.05 OrthoFinder output from all 47 species
Aop_g02559 No alias subunit epsilon *(CCT5) of CCT chaperonin folding... 0.02 OrthoFinder output from all 47 species
Aspi01Gene26083.t1 Aspi01Gene26083 subunit epsilon *(CCT5) of CCT chaperonin folding... 0.04 OrthoFinder output from all 47 species
Azfi_s0390.g067696 No alias subunit epsilon *(CCT5) of CCT chaperonin folding... 0.03 OrthoFinder output from all 47 species
Ceric.01G032800.1 Ceric.01G032800 subunit epsilon *(CCT5) of CCT chaperonin folding... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.47 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.02 OrthoFinder output from all 47 species
Cre03.g156750 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.05 OrthoFinder output from all 47 species
Dcu_g05555 No alias subunit epsilon *(CCT5) of CCT chaperonin folding... 0.04 OrthoFinder output from all 47 species
Dde_g26518 No alias subunit epsilon *(CCT5) of CCT chaperonin folding... 0.03 OrthoFinder output from all 47 species
Gb_12826 No alias CCT5 subunit epsilon of CCT chaperonin folding complex 0.04 OrthoFinder output from all 47 species
Gb_40545 No alias CCT5 subunit epsilon of CCT chaperonin folding complex 0.03 OrthoFinder output from all 47 species
LOC_Os06g36700.1 LOC_Os06g36700 CCT5 subunit epsilon of CCT chaperonin folding complex 0.1 OrthoFinder output from all 47 species
Len_g15605 No alias subunit epsilon *(CCT5) of CCT chaperonin folding... 0.03 OrthoFinder output from all 47 species
Lfl_g19360 No alias subunit epsilon *(CCT5) of CCT chaperonin folding... 0.05 OrthoFinder output from all 47 species
MA_10435597g0010 No alias CCT5 subunit epsilon of CCT chaperonin folding complex 0.06 OrthoFinder output from all 47 species
Mp7g17510.1 No alias CCT5 subunit epsilon of CCT chaperonin folding complex 0.05 OrthoFinder output from all 47 species
Msp_g03534 No alias subunit epsilon *(CCT5) of CCT chaperonin folding... 0.02 OrthoFinder output from all 47 species
Ore_g09320 No alias subunit epsilon *(CCT5) of CCT chaperonin folding... 0.03 OrthoFinder output from all 47 species
Pp3c20_23570V3.1 Pp3c20_23570 TCP-1/cpn60 chaperonin family protein 0.01 OrthoFinder output from all 47 species
Smo158694 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.07 OrthoFinder output from all 47 species
Solyc05g013990.3.1 Solyc05g013990 CCT5 subunit epsilon of CCT chaperonin folding complex 0.1 OrthoFinder output from all 47 species
Spa_g12182 No alias subunit epsilon *(CCT5) of CCT chaperonin folding... 0.04 OrthoFinder output from all 47 species
Zm00001e011557_P001 Zm00001e011557 CCT5 subunit epsilon of CCT chaperonin folding complex 0.08 OrthoFinder output from all 47 species
Zm00001e032727_P001 Zm00001e032727 CCT5 subunit epsilon of CCT chaperonin folding complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002423 Cpn60/GroEL/TCP-1 40 531
No external refs found!