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  5. GSVIVT01021024001

GSVIVT01021024001 (GRP2, ATGRP2, GR-RBP2)


Aliases : GRP2, ATGRP2, GR-RBP2

Description : RNA processing.organelle machineries.RNA editing.ORRM-type RNA editing factor


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021024001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00114p00125610 evm_27.TU.AmTr_v1... Small RNA-binding protein 11, chloroplastic... 0.04 OrthoFinder output from all 47 species
AT1G74230 GR-RBP5 glycine-rich RNA-binding protein 5 0.02 OrthoFinder output from all 47 species
AT2G37510 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
AT3G23830 GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 0.08 OrthoFinder output from all 47 species
AT3G26420 ATRZ-1A RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 OrthoFinder output from all 47 species
AT5G61030 GR-RBP3 glycine-rich RNA-binding protein 3 0.03 OrthoFinder output from all 47 species
Adi_g043489 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111293 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05819 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g20823 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06479 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01126 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07242 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g14283 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g15096 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene25249.t1 CCR2, ATGRP7,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g009790 CCR2, ATGRP7,... not classified & original description: CDS=136-657 0.04 OrthoFinder output from all 47 species
Azfi_s0116.g046316 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: CDS=161-592 0.03 OrthoFinder output from all 47 species
Cba_g01674 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06390 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g08805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10857 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14006 ATRZ-1A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G066000.1 Ceric.09G066000 RNA chaperone *(RZ1) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.30G044500.1 Ceric.30G044500 RNA chaperone *(RZ1) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g09825 GR-RBP4, GRP4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g48605 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16014 GR-RBP4, GRP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21349 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_18168 GR-RBP3 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
Gb_40269 No alias RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
Lfl_g05878 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436424g0010 ATRZ-1A RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.05 OrthoFinder output from all 47 species
MA_77292g0010 No alias RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species
Mp1g21200.1 GRP2, ATGRP2, GR-RBP2 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
Msp_g29443 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g15799 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04562 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05754 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07983 GR-RBP4, GRP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09294 GR-RBP5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12375 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c12_23410V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.03 OrthoFinder output from all 47 species
Pp3c12_23420V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.01 OrthoFinder output from all 47 species
Pp3c4_6610V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.05 OrthoFinder output from all 47 species
Ppi_g61530 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009193 No alias not classified & original description: CDS=133-507 0.04 OrthoFinder output from all 47 species
Sam_g35045 No alias RNA chaperone *(RZ1) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g48373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo140819 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Solyc01g104840.4.1 ATRZ-1A, Solyc01g104840 RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
Solyc05g053780.4.1 GRP2, ATGRP2,... RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species
Solyc10g081180.2.1 GR-RBP3, Solyc10g081180 RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species
Spa_g06392 No alias RNA chaperone *(RZ1) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g10567 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g10878 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12557 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20439 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04956 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06526 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27808 GR-RBP4, GRP4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30660 GR-RBP3 RNA ediTing factor *(ORRM3) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e018330_P004 GR-RBP3, Zm00001e018330 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
Zm00001e028481_P002 GRP2, ATGRP2,... RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.09 OrthoFinder output from all 47 species
Zm00001e033010_P001 Zm00001e033010 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 42 112
No external refs found!