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  5. GSVIVT01021212001

GSVIVT01021212001


Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor


Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021212001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00080p00087770 TMO6,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT1G07640 OBP2 Dof-type zinc finger DNA-binding family protein 0.04 OrthoFinder output from all 47 species
AT2G34140 No alias Dof-type zinc finger DNA-binding family protein 0.04 OrthoFinder output from all 47 species
AT3G55370 OBP3 OBF-binding protein 3 0.05 OrthoFinder output from all 47 species
AT3G61850 DAG1 Dof-type zinc finger DNA-binding family protein 0.05 OrthoFinder output from all 47 species
AT4G21040 No alias Dof-type zinc finger domain-containing protein 0.02 OrthoFinder output from all 47 species
AT5G60200 TMO6 TARGET OF MONOPTEROS 6 0.03 OrthoFinder output from all 47 species
Adi_g007394 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086972 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110724 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38452 OBP4 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26374.t1 Aspi01Gene26374 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g39110 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G083700.1 OBP4, Ceric.14G083700 transcription factor *(DOF) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.22G032900.1 TMO6, Ceric.22G032900 transcription factor *(DOF) & original description:... 0.04 OrthoFinder output from all 47 species
GSVIVT01024986001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
Gb_20867 CDF3 Cyclic dof factor 3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_23561 TMO6 transcription factor (DOF) 0.06 OrthoFinder output from all 47 species
LOC_Os01g15900.1 CDF2, LOC_Os01g15900 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
LOC_Os02g15350.1 LOC_Os02g15350 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
LOC_Os05g02150.1 OBP3, LOC_Os05g02150 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
LOC_Os07g48570.1 CDF2, LOC_Os07g48570 transcription factor (DOF) 0.06 OrthoFinder output from all 47 species
LOC_Os10g35300.2 LOC_Os10g35300 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
LOC_Os12g38200.1 LOC_Os12g38200 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Len_g13353 No alias transcription factor *(DOF) & original description: none 0.04 OrthoFinder output from all 47 species
MA_18267g0010 HCA2, DOF5.6 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
MA_46520g0010 No alias transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
MA_56828g0010 No alias transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Mp2g20790.1 TMO6 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Ore_g17212 OBP3 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09266 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Smo29617 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Solyc03g115940.4.1 CDF3, Solyc03g115940 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
Solyc05g007880.4.1 CDF1, Solyc05g007880 Cyclic dof factor 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc06g076030.3.1 Solyc06g076030 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Solyc08g082910.2.1 Solyc08g082910 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Tin_g00696 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001988_P001 TMO6, Zm00001e001988 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Zm00001e003086_P001 ADOF1, DOF1,... transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
Zm00001e005107_P001 ADOF1, DOF1,... transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Zm00001e015414_P004 Zm00001e015414 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Zm00001e015597_P001 HCA2, DOF5.6,... transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Zm00001e031750_P001 Zm00001e031750 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Zm00001e038479_P002 OBP3, Zm00001e038479 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
InterPro domains Description Start Stop
IPR003851 Znf_Dof 60 115
No external refs found!